Circos Tiles plot

I am using Circos and trying to make tile 2dplot. My ideogram is mm10. Everytime I execute the job I can just visualise ideogram with no 2D plot.

Hi @akankshabafna

There is likely a format/naming problem with the data provided for the “2D Data Tracks” input.

The tutorial here provides many examples with sample data, and should help to find the problem: Visualisation with Circos

The Circos tool form also has some tips:

  • “No data or plot crashes? Check that your chromosome naming scheme matches between your Karyotype file and your datasets.”

2 posts were split to a new topic: Circos “colorExact” error