DRAM annotate gives empty files

usegalaxy.eu support
1

I cannot report it directly as it finishes with success, but always returns empty files.

Tool: Galaxy | Europe

2

Hi @vebaev

It sounds like you are not getting any hits. Make sure that the inputs are well formatted, then experiment with different parameters.

If you are looking for examples to compare to – please see the help section on the tool form for links to more resources, including a Wiki hosted by the author with tutorials.

3

Hi @jennaj
I not think getting zero hits with zero predicted genes and annotations is possible in this case. I have run in KBase DRAM tools with same genome in FASTA format and got results, but in Galaxy I got nothing?!

4

Hi @vebaev

If you want to share your history with that input/output, we can take a quick look. Sharing your History

5

Sure! PM me on which email i can share it?

6

Hi @jennaj,

Here is the history - Galaxy | Europe

Thanks!

1 Like
7

This looks like a dependency problem, and is reproducible. Let’s ping an EU admin: @wm75

ImportError: cannot import name ‘PearsonRConstantInputWarning’ from ‘scipy.stats’ (/usr/local/tools/_conda/envs/__dram@1.3.5/lib/python3.10/site-packages/scipy/stats/init.py)

1 Like
8

We think we fixed the tool environment. @vebaev can you try again?

9

Yes, now it works!

2 Likes