This is the link of my history - Galaxy.
The link of one of the jobs containing the same error is https://usegalaxy.eu/api/datasets/26c75dcccb616ac8b2606328ac90df6b/display?to_ext=gff3
I am running braker3 ( toolid - toolshed.g2.bx.psu.edu/repos/genouest/braker3/braker3/3.0.8+galaxy0) for annotation of Etroplus caranesis genome in galaxy EU server. The input files which I am using are -
- Reference genome file with simplified headers (.fasta format),
- .bam file (rna-seq data was aligned to the reference genome file) ,
- Protein sequences in .fasta format(simplified headers) from another closely related species
Running the tool is resulting in the following error - ERROR in file /opt/BRAKER/scripts/braker.pl at line 5939
failed to execute: /opt/BRAKER/scripts/get_gc_content.py --sequences /data/dnb11/galaxy_db/files/7/b/7/dataset_7b75866e-a463-4df8-a08f-d0c26bd5fa54.dat --print_sequence_length 1> /data/jwd07/main/085/300/85300852/working/braker/gc_content.out 2> /data/jwd07/main/085/300/85300852/working/braker/errors/gc_content.stderr!.
As i dont have access to the scripts of braker3 and the log files containing the errors. I request the help of the admin or the developers of braker3 to help me to proceed. Thank you.