Hello community, I have a counts file as shown in attached photo, when I try to run edgeR on it , with a contrast between the samples (HT1-WT1)-(HT2-WT2)-(HT3-WT3). It keeps giving me errors.
Is something wrong with my file format?
Try these two items:
- Convert the format to tabular Converting the file format
- Adjust the format to match what is the lower help section on that tool form.
- “Example - Single Count Matrix”
- You might just need to add in the header to the first column (GeneID)