I’m using my own local Galaxy (release 18.09), and I’m trying to add hg38 genome assembly on HISAT2. I’m managing that from data manager in the Admin section, and I installed the last available versions of HISAT2 index and HISAT2. When I used HISAT2 index builder for getting hg38 an error occurred.
I checked for the HISAT2 index builder dependencies and it requires the 2.0.5 version of HISAT2, that isn’t available on galaxy, hence the dependency can’t be resolved. Is it possible that the unsolved dependencies are causing the issue?