Make variable names unique

I am trying to run the pipeline from this Clustering 3K PBMCs with Scanpy on my own data from 10x genomics but when I try to run quality control as well as plotinf functions on the annotated data matrix I get the error that the variable names are not unique. Is there anyway to make them unique in galaxy rather than using Python?

Thanks!

Hi @joshua.harvey.20,
as Pavan suggested you, you can use Manipulate Annadata tool with “Function to manipulate the object” → “Makes the var index unique by appending ‘1’, ‘2’, etc”.

Regards

1 Like

Thanks very much that’s great and it solved it.

Best,

Josh