Need reference genome for Danio rerio for using HISAT2


I want to use the HISAT2 tool for paired-end read alignment. But the reference genome that I need is not available under the built-in options provided.
It is directed to contact the Galaxy team if the genome of interest is not listed. Hence the post.

Thanking you in advance


Hi @omkar_desai

We are still working on adding more genomes to

Try at for now – they have the most current UCSC assembly for this species indexed.