Need reference genome for Danio rerio for using HISAT2

usegalaxy.org support
1

Hello,

I want to use the HISAT2 tool for paired-end read alignment. But the reference genome that I need is not available under the built-in options provided.
It is directed to contact the Galaxy team if the genome of interest is not listed. Hence the post.

Thanking you in advance

Omkar

2

Hi @omkar_desai

We are still working on adding more genomes to UseGalaxy.org.

Try at UseGalaxy.eu for now – they have the most current UCSC assembly for this species indexed.