I want to use DESeq2 to compare between samples before treatment and after treatment individually as paired samples.
Pt.1 before vs Pt.1 after
Pt.2 before vs Pt.2 after
Pt.3 before vs Pt.3 after
I followed this tutorial:
But I’m not sure if the DESeq2 in the above tutorial it compares patients individually or as a group, and How to do DESeq2 for paired samples for each patients individually in usegalaxy?