request for tomato genome version SL4.0

Hello,

I would like to request adding the latest tomato genome assembly to Galaxy Main.

The latest genome assembly is called “SL4.0” and also S_lycopersicum_Feb_2019.

Here is the sequence from the tomato genome Web site:

ftp://ftp.solgenomics.net/tomato_genome/assembly/build_4.00/S_lycopersicum_chromosomes.4.00.fa.gz

Many thanks,

Ann Loraine (IGB project)

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This is to reinforce the request made by Ann. Please add the SL4.0 version of tomato genome to Galaxy!

Hi,

sorry for the late reply. We install this Tomato genome on usegalaxy.eu

Cheers,
Bjoern

I am sorry to insist, but I think the SL4.0 version of tomato genome is not in Galaxy yet. Could you please include it… Thank you so much in advance.

Cheers,
tania

Hi @Tan_H

For now, the genome is available at UseGalaxy.eu for most tools. Please double check, and if a specific tool seems to be missing the assembly, please post back the tool name/version and we can followup more to come up with a temporary workaround. :slight_smile:

The other public usegalaxy.* servers will likely host this index, and many other requested indexes, by the end of this year. Part of that work includes adding in entirely new genomes but also filling in gaps.

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