This is the first time to index a reference transcriptome for Salmon in a local galaxy server built on Centos 7. The indexing via Salmon data manager failed with some errors:
- libtbb.so.2 was missing. The error message is pasted below:
Fatal error: Exit code 127 ()
salmon: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory
Error building index.
The error was fixed by installing tbb: sudo yum tbb
- Once tbb was installed, re-run the Salmon data manager with some new error message:
Fatal error: Exit code 127 ()
salmon: symbol lookup error: salmon: undefined symbol: _ZN3tbb8internal24concurrent_queue_base_v818internal_push_moveEPKv
Error building index.
I am looking for the possible solution to fix the issue with Salmon data manager. Your help will be appreciated.