Unable to get results in DESeq2

Hello.
After running DESeq2 on 2 of my samples, one control other treated, I am unable to get output for the same.
“error
An error occurred with this dataset”

My workflow includes FASTQC>Trimmomatic>HISAT2>Stringtie>DESeq2.

Could anyone please guide me on what could be going wrong?
Thankyou in advance.

Dear @Shriya_Sawant,
Can you share your history? It is not clear, what the problem might be. Your input data is potentially not in the right format.

Kind regards,
Florian

1 Like