Galaxy Community Help

Topic	Replies	Views	Activity
Extract dataset collections , tool-help , __extract_dataset__	1	65	June 12, 2025
Bacterial genome sequence analysis usegalaxy.org support mapping , blast , makeblastdb , tool-help , ncbi_tblastn_wrapper	1	44	June 12, 2025
Want to add a new organism for HISAT2 analysis usegalaxy.org support reference-index , reference-annotation , reference-genome	1	38	June 12, 2025
Understanding bcftools isec output files (0000.vcf, 0001.vcf, 0002.vcf, 0003.vcf, sites.txt, README.txt) tool-help , bcftools_isec	1	328	June 11, 2025
snippy tutorial - snpeff step variant-analysis , snpeff_build_gb	9	186	June 11, 2025
Novoplasty inputs usegalaxy.eu support development-tools , novoplasty	4	137	June 11, 2025
Format issues while trying yo use rnaviralspades usegalaxy.eu support collections , tool-help , spades_rnaviralspades	2	53	June 11, 2025
GTN Custom topics list devops-administration , gtn-tutorial	1	35	June 10, 2025
How to set alignIntronMax parameter in RNA STARSolo in Galaxy? usegalaxy.org support tool-help , single-cell , rna_starsolo	8	157	June 10, 2025
Colabfold Alphafold - error usegalaxy.org support colabfold	11	134	June 10, 2025
Colabfold MSA- error usegalaxy.org support tool-help , colabfold	9	197	January 30, 2025
save (and load) files on local host from Interactive Tool usegalaxy.org support interactive-tools	43	374	June 10, 2025
sortmeRNA creating identical aligned and unaligned files? usegalaxy.org.au support transcriptomics , tool-help , bg_sortmerna	2	79	June 10, 2025
vtk file type and file extension upload , development-tools , datatype	6	95	June 9, 2025
ATAC-seq and chromatin accessibity IGV view usegalaxy.org support workflow , tool-help	0	85	June 6, 2025
Upload help -- internet connections to local data or via URL usegalaxy.org support upload	1	47	June 5, 2025
Installing BRAKER3 with GENEMARK configured on a local Galaxy server devops-administration , tool-install , galaxy-local , genemark	5	122	June 4, 2025
RNA editing tools usegalaxy.eu support	1	53	June 4, 2025
Median coverage (and range) per targeted base	8	142	June 3, 2025
Host Removal with BBMap usegalaxy.org support	0	44	June 3, 2025
Trouble Uploading Large Files usegalaxy.org support upload	4	151	June 3, 2025
galaxy tool xml file fetching files into a collection usegalaxy.org support development-tools	7	122	June 2, 2025
planemo shed_create fails on testtoolshed development-tools , planemo , toolshed	6	83	June 2, 2025
Running galaxy stuck with "Activating virtualenv at .venv Updating service Gunicorn" usegalaxy.org support tool-help	3	77	June 2, 2025
Problem with "featurecounts" after MACS2 call peak for ATAC-seq analysis usegalaxy.org support troubleshooting , transcriptomics	1	66	June 2, 2025
Flow of work against the type of data usegalaxy.eu support devops-administration	2	59	June 2, 2025
RNAseq mapping issues usegalaxy.eu support	7	90	June 2, 2025
Planemo test output files development-tools , planemo , troubleshooting	1	57	May 31, 2025
CSV output displays header twice usegalaxy.org support text-manipulation , visualization	3	44	May 30, 2025
Job failure with “sqlite3.OperationalError: unable to open database file” on usegalaxy.org usegalaxy.org support upload	3	34	May 30, 2025