Can you please tell me how you solved the problem. I am facing same using Deseq.
The type of error the prior person had, along with the majority of questions about this tool, involved fixing one of these:
- Problem with the input count datasets (label format)
- Problem with the reference annotation (GTF mismatch or format problem)
- Mismatches between actual input content versus tool form settings (file has headers? , count/TMP type)
If you want to paste back the Dataset Information page view ( icon in any dataset), or post a shared history link, we can offer more specific help.