Manta SV error using reference genome

usegalaxy.eu support
1

Dear all,
I’m facing with an error when I use Manta SV on bam files and my reference genome
The error is:
“Error running samtools faidx for Manta /usr/bin/env: ‘python2’: No such file or directory”

I was wondering if i can do something to overcame the error

Thank you in advance
Best

2

Sounds like a problem with the tool install on Galaxy Europe. We’ll look into this (probably until Monday).

3

Thank you so much for the update
Best
Sal

4

This particular error with Manta is now resolved.
Hope the tool is now usable for your purpose.

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