Starsolo: Spliced and unspliced matrices


I was wondering if it would be possible to add a parameter to the RNA STARsolo tool. The new option --soloFeatures Gene Velocyto from STAR 2.7.9a would allow quantification of spliced/unspliced reads.


Erik J

Hi @erik_jacques,
a Pull Request has been opened in order to include that functionality.


1 Like

Cool! Thanks!


I see that there is an issue in the pull request. Is there anything I can do to help? Perhaps provide sample data?

Hi, the files that need to be provided are those inside the Velocyto folder, isn’t it? Regards

The function was released with STAR 2.7.9a (Galaxy uses 2.7.8a) and I don’t see a velocyto folder under the master branch so I’m not sure.