Trinity taking over 3 days

Hey, i’m running a transcriptome assembly with 48 pairs of RNA-seqs (about 32gb of data). Its been over 3 days now and it’s still running. Is this a normal thingy or should i s rnaSPAdes any better with run times???

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Hi @Ash_K

All of the transcriptome assembly tools probably run on the same cluster at the AU server. So, leaving your jobs queued is likely the best advice.

How jobs work →

Hope this helps! :slight_smile: