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Distance Analysis - time series using MDAnalysis (Galaxy Version 1.0.0+galaxy0) tool inputs
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2
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20
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February 5, 2026
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I seem to run into Fatal error: Exit code 13 () error_level: 3 while following through with the tutorial for Vina Docking after following every step
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1
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25
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January 23, 2026
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Empty Output folder - Vina Docking
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5
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71
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October 21, 2025
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Free energy landsape using Bio3d in galaxy
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5
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103
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August 18, 2025
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CHARMM36 force field for gromacs
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2
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64
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August 12, 2025
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Error in GROMACS solvation and ading ions
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1
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69
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October 15, 2024
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Cannot analyze MD simulation using GROMACS - error 127
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2
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505
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September 15, 2023
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Generate a topology for the ligand
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10
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667
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August 7, 2023
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Group Protein_UNK referenced in the .mdp file was not found in the index file.
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1
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967
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April 1, 2023
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error due to time limit
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4
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760
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December 20, 2023
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Merge Gromacs Topologies tool not found?
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5
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905
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September 23, 2022
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To run longer simulation like 100ns
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2
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371
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September 23, 2022
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Free Energy Calculation from DCD Trajectory?
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1
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664
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September 21, 2022
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Position restraints error !!!
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6
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1005
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August 31, 2022
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Error when trying to use GROMACS on PDB of Protein-Protein Complex
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4
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925
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March 21, 2022
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Tool error in protein-ligand md simulation in Gromacs
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13
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2510
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September 6, 2021
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