|
Distance Analysis - time series using MDAnalysis (Galaxy Version 1.0.0+galaxy0) tool inputs
|
|
2
|
24
|
February 5, 2026
|
|
I seem to run into Fatal error: Exit code 13 () error_level: 3 while following through with the tutorial for Vina Docking after following every step
|
|
1
|
33
|
January 23, 2026
|
|
Empty Output folder - Vina Docking
|
|
5
|
93
|
October 21, 2025
|
|
Free energy landsape using Bio3d in galaxy
|
|
5
|
138
|
August 18, 2025
|
|
CHARMM36 force field for gromacs
|
|
2
|
73
|
August 12, 2025
|
|
Error in GROMACS solvation and ading ions
|
|
1
|
76
|
October 15, 2024
|
|
Cannot analyze MD simulation using GROMACS - error 127
|
|
2
|
510
|
September 15, 2023
|
|
Generate a topology for the ligand
|
|
10
|
699
|
August 7, 2023
|
|
Group Protein_UNK referenced in the .mdp file was not found in the index file.
|
|
1
|
973
|
April 1, 2023
|
|
error due to time limit
|
|
3
|
772
|
September 26, 2022
|
|
Merge Gromacs Topologies tool not found?
|
|
5
|
906
|
September 23, 2022
|
|
To run longer simulation like 100ns
|
|
1
|
382
|
September 23, 2022
|
|
Free Energy Calculation from DCD Trajectory?
|
|
1
|
669
|
September 21, 2022
|
|
Position restraints error !!!
|
|
6
|
1017
|
August 31, 2022
|
|
Error when trying to use GROMACS on PDB of Protein-Protein Complex
|
|
4
|
930
|
March 21, 2022
|
|
Tool error in protein-ligand md simulation in Gromacs
|
|
13
|
2520
|
September 6, 2021
|