Galaxy Community Help

Topic	Replies	Views	Activity
How to capture a share link to a Workflow Invocation usegalaxy.eu support share-or-publish , queued-gray-datasets , workflow-invocation	4	115	May 2, 2026
Error while running GoSeq after cut the required columns and preparing the DE and Length files usegalaxy.org.au support workflow , tool-help , goseq	1	31	May 1, 2026
Cut Issue Related to Metagenomic usegalaxy.org support queued-gray-datasets , tool-help , cut1	1	23	April 30, 2026
Issue with edgeR results for endometrial dataset usegalaxy.eu support troubleshooting , transcriptomics	3	40	April 30, 2026
Issue with extracting datasets from unzipped files containing .gitkeep files usegalaxy.eu support troubleshooting , tool-help , unzip , zip-explorer	6	90	April 30, 2026
KOfam database (HMM profiles of KEGG Orthologs): licensing and KEGG tool-help , kegg-index-license , licence , kofamscan	1	67	April 29, 2026
Kraken2 databases question reference-index , tool-help , kraken2	1	34	April 29, 2026
Samtools index not visible in galaxy troubleshooting , datatype	1	25	April 29, 2026
[samtools fixmate] memory allocation error usegalaxy.org.au support filter-bam , exceeds-memory-error , samtools_fixmate	5	49	April 27, 2026
Unfold bug, missing newline char text-manipulation , tool-help , tp_unfold_column_tool	3	44	April 27, 2026
Panaroo error - missing dependancies? usegalaxy.org.au support troubleshooting , tool-help , panaroo	8	157	April 27, 2026
Panaroo error with GFF3 input TIP: include .gff in the file names and collection identifiers usegalaxy.eu support tool-help , panaroo	1	94	April 26, 2026
Hosting to UCSC with Custom Builds usegalaxy.org support galaxy-local , troubleshooting	5	42	April 25, 2026
quality string - read length problems in Cutadapt output usegalaxy.eu support troubleshooting , quality-control	2	350	April 24, 2026
Action requires account activation usegalaxy.org support account , resources	2	102	April 24, 2026
Stuck in queue SPAdes usegalaxy.org support spades , tool-help	1	46	April 24, 2026
Hyperparameter search missing option usegalaxy.org support gtn-tutorial , tool-help , sklearn_searchcv	3	39	April 24, 2026
MaxQuant probelm usegalaxy.eu support maxquant	1	34	April 24, 2026
Installing a new tool usegalaxy.eu support tool-dev	6	76	April 23, 2026
IQ-TREE configuration: consensus tree creation with 5 newick tree files usegalaxy.eu support tool-help , phylogeny , iqtree	10	117	April 22, 2026
Bacteria community and Antibiotic Resistance Gene workflow	1	22	April 22, 2026
Request Adding Salmonella cgMLST (3002 loci) scheme for CoreProfiler allele_calling usegalaxy.org support reference-index , coreprofiler_allele_calling	1	54	April 22, 2026
Issue at RNA-STAR step: adjusting GTF annotation usegalaxy.org support mapping , transcriptomics , tool-help , rna_star	3	62	April 22, 2026
Jobs Stuck processing with a workflow: Using the job cache to rerun workflows with canceled outputs usegalaxy.eu support workflow , troubleshooting , queued-gray-datasets , workflow-options , resources	3	84	April 21, 2026
RNA-STAR has been queued queued-gray-datasets	1	440	April 21, 2026
Issue with file upload and missing history data on Galaxy storage-dashboard	1	35	April 20, 2026
Problem with falco tool usegalaxy.eu support troubleshooting , usinggalaxy	2	44	April 20, 2026
Error while running metaspades usegalaxy.org support assembly , tool-help , metaspades	2	324	April 18, 2026
Fatal error: using trinity assembly , transcriptomics , tool-deprecated , rna-seq	2	944	April 18, 2026
Error with de novo assembly using Trintiy usegalaxy.org support assembly , transcriptomics , tool-deprecated , rna-seq	5	438	April 18, 2026