Hi @sudeboler
Thanks for sharing your history!!
The first column of the convert file needs to match the existing element identifiers.
Screenshot of what you have right now:
Try changing this:
SRR26682943 group:WT
To this. For each line do the same.
SRR26682943_WT group:WT
The Tag elements function first makes a “match” using the existing element identifier, then links in a new tag value as specified in the file. You didn’t get any tags added since the element identifiers in the mapping file were no longer an exact match to the original values.
Please give that a try and let us know if that solves it.