Issue with StringTie

[jennaj]

@peppe

I actually figure out that there is the error only when running StringTie with the output for differential expression analysis using DESeq2.

It is not clear what tool is presenting with an error. DE analysis is covered in much detail in the Galaxy Tutorials and might be able to help you to solve the problem.

Troubleshooting overview:

• Troubleshooting resources for errors or unexpected results

Troubleshooting FAQ, including how to check for input problems:

• My job ended with an error. What can I do?

The subsection of that first post that covers using tutorials to troubleshoot usage problems. You’ll find DE analysis under the “Transcriptomics” tutorial group.

@jennaj

Galaxy Training Network Tutorials : Some GTN tutorials are appropriate for Galaxy Main and some are not. Where you can run each is noted per tutorial – click on the Galaxy instances gear icon to review the Public Galaxy server choices. If a tutorial is supported by a pre-configured Galaxy Docker training image, instructions for how to get it will be listed below the tutorial listings, per category.

Hope that helps!