Hi,
I have been trying to use single-cell RNA-Seq alignment and bar code processing software STARsolo on four different samples from the same experiment. However, only one of the samples can be processed - the one with the smallest number of sequences.
Each time I try to run a sample, I get the same basic error:
EXITING because of fatal ERROR: not enough memory for BAM sorting:
SOLUTION: re-run STAR with at least --limitBAMsortRAM 11246945151
Jun 11 21:31:41 … FATAL ERROR, exiting
The error messages suggests I can fix this problem by providing option --limitBAMsortRAM 11246945151. However, I don’t see this as a possible option in the tool’s parameter settings in Galaxy.
I made a History public in case someone has time to look at the results and let me know how I can fix the problem.
Here is the link to the History:
Thank you in advance for any help you can provide!
- Ann L.