Galaxy Community Help

Topic	Replies	Views	Activity
What should I do if my data exceeds the given 250GB of storage? account , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	208	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10231	April 17, 2024
StringeTie Generating Empty Transcript and Gene Counts usegalaxy.org support server-open-issue , stringtie	15	75	September 18, 2024
Targetfinder encountering error because it "uses more memory than allowed" (I don't think this is true); other strategies? usegalaxy.org support exceeds-memory-error , tool-help , targetfinder	1	2	September 18, 2024
Make custom blastdb for rpstblastn usegalaxy.eu support tool-help , ncbi_makeprofiledb	2	4	September 18, 2024
Need help with the dataset error report on MITOS (version 1.1.7) de-novo annotation tool of metazoan mitochondrial genomes usegalaxy.eu support	1	4	September 18, 2024
genome assembly from multiple samples?	3	16	September 18, 2024
could you make KMC from the toolshed (available Galaxy Australia) also available in usegalaxy.eu? usegalaxy.eu support	6	18	September 17, 2024
Multi mapped reads usegalaxy.eu support filter-bam , tool-help , bamfilter	1	7	September 17, 2024
HicDetectLoop bug cleanlab version issue usegalaxy.eu support tool-help , hicexplorer_hicdetectloops	3	118	September 17, 2024
How heavy is Galaxy right after installation? usegalaxy.eu support galaxy-local	4	22	September 17, 2024
variant's prediction of pathogenicity usegalaxy.org support gtn-tutorial , variant-analysis	1	5	September 17, 2024
Question about Minimap2 and nanopore reads mapping , single-cell	1	12	September 17, 2024
Need help to run Phyloseq in Galaxy to characterize microbial taxa usegalaxy.org.au support tool-help , interactive_tool_phyloseq	2	14	September 17, 2024
MiRDeep2 Quantifier tool-help , rbc_mirdeep2	9	16	September 17, 2024
Map with BWA-MEM problem - An error occurred with this dataset: bam format mapping , bwa-mem	3	10	September 17, 2024
MultiQC 1.24 does not allow comment lines in custom content usegalaxy.eu support multiqc , tool-help	3	11	September 16, 2024
Anyone else having issues with Salmon Data Manager never installing? galaxy-local	7	9	September 16, 2024
Fail to load GFF3 into IGV usegalaxy.org support troubleshooting , igv	1	4	September 16, 2024
Need Help with Mapping Genome Skimming Data and Generating Consensus Sequences in Galaxy usegalaxy.eu support mapping , tool-help	1	7	September 16, 2024
GPU-enabled Interactive Jupyter Notebook for Machine Learning troubleshooting	2	5	September 16, 2024
MetaPhlAn Database reference-index , galaxy-local , metagenomics	1	5	September 16, 2024
creating a Venn Diagram visualization , venn	1	3	September 16, 2024
how to retrieve purged dataset	1	9	September 16, 2024
Issues with UMI Tools deduplicate usegalaxy.org support tool-help , umi_tools_dedup	6	17	September 14, 2024
Questions about uploading PDB file to 'Prepare receptor' usegalaxy.org support proteomics , prepare_receptor	1	3	September 13, 2024
Error running EdgeR after StringTie usegalaxy.org.au support troubleshooting	1	10	September 13, 2024
Circos - heatmap - viridis circos , tool-help	7	25	September 12, 2024
DNAdiff output files usegalaxy.eu support tool-help , mummer_dnadiff	9	26	September 12, 2024
Convert genome coordinates liftover , tool-help , crossmap	1	6	September 12, 2024

What should I do if my data exceeds the given 250GB of storage?

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

208

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10231

April 17, 2024

StringeTie Generating Empty Transcript and Gene Counts

usegalaxy.org support

server-open-issue , stringtie