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Variant calling with VarScan on WGS data
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5
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20
|
October 12, 2024
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variant's prediction of pathogenicity
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1
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10
|
September 17, 2024
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Exome sequencing data analysis for diagnosing a genetic disease: Problem in Finding and reporting plausible causative variants step
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7
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28
|
September 5, 2024
|
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Download of free Bayes vcf files not possible in some cases
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1
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6
|
September 4, 2024
|
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FreeBayes Software Error Report
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2
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16
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August 26, 2024
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problems with vcftools merge command
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2
|
478
|
August 9, 2024
|
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Variant annotation and calling
|
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1
|
17
|
August 8, 2024
|
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FilterMutectCalls not avaible on galaxy
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1
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10
|
July 31, 2024
|
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DeepVariant low quality sorting
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1
|
24
|
July 31, 2024
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Issue with ivar variants Output in Galaxy: Missing Annotations
|
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1
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12
|
July 24, 2024
|
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1001_Genome project
|
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1
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9
|
July 22, 2024
|
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Comparing SNPs across samples and sample groups
|
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3
|
21
|
July 19, 2024
|
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snippy analysis on bacterial isolates
|
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3
|
10
|
July 17, 2024
|
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CNV detection from BAM files (mouse)
|
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1
|
36
|
July 9, 2024
|
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Will Nanopore-related tools be updated to accept pod5 files?
|
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2
|
95
|
July 8, 2024
|
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Is Gatk/4.4.0.0 avialble in galaxy?
|
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1
|
107
|
May 28, 2024
|
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FreeBayes variant calling and Snpeff variant annotation
|
|
19
|
293
|
September 17, 2024
|
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bcftools view problem
|
|
2
|
104
|
May 20, 2024
|
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Identifying polymorphisms in mapped RNA seq data and the corresponding genes
|
|
1
|
65
|
May 10, 2024
|
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FTDNA BAM to T2T pileup and haplogroup
|
|
2
|
161
|
May 7, 2024
|
|
Gemini Load error in variant calling
|
|
1
|
101
|
May 6, 2024
|
|
Extract fields from sample-specific/genotype columns of a VCF with SnpSift Extract Fields
|
|
3
|
181
|
May 6, 2024
|
|
FreeBayes regd.
|
|
1
|
130
|
March 25, 2024
|
|
Regarding SNP eff
|
|
2
|
169
|
January 17, 2024
|
|
Help with vcf annotation
|
|
2
|
268
|
January 10, 2024
|
|
To know about the polymorphism at a given locus
|
|
1
|
208
|
January 10, 2024
|
|
Snippy results in no variants (my data and microbial variant tutorial)
|
|
1
|
571
|
December 22, 2023
|
|
Synonymous SNPs/mutations
|
|
1
|
417
|
December 22, 2023
|
|
Merging snippy core output
|
|
1
|
364
|
December 22, 2023
|
|
variant calling by Freebyes
|
|
1
|
692
|
December 22, 2023
|