Galaxy Community Help

Topic	Replies	Views	Activity
Why my jobs are being queued for more than 24 hours and still waiting queued-gray-datasets	1	62	May 6, 2026
Issue with Maker usegalaxy.eu support server-side-error , genome-annotation , maker	1	19	May 6, 2026
DADA2 tool issues in Galaxy France usegalaxy.eu support troubleshooting , usinggalaxy , usegalaxy-fr	1	27	May 6, 2026
DESeq2 factors and factor level Input usegalaxy.eu support troubleshooting , transcriptomics , tool-help , deseq2	4	36	May 5, 2026
How to capture a share link to a Workflow Invocation usegalaxy.eu support share-or-publish , queued-gray-datasets , workflow-invocation	4	81	May 2, 2026
Error while running GoSeq after cut the required columns and preparing the DE and Length files usegalaxy.org.au support workflow , tool-help , goseq	1	18	May 1, 2026
Cut Issue Related to Metagenomic usegalaxy.org support queued-gray-datasets , tool-help , cut1	1	12	April 30, 2026
Issue with edgeR results for endometrial dataset usegalaxy.eu support troubleshooting , transcriptomics	3	27	April 30, 2026
Issue with extracting datasets from unzipped files containing .gitkeep files usegalaxy.eu support troubleshooting , tool-help , unzip , zip-explorer	7	66	April 30, 2026
KOfam database (HMM profiles of KEGG Orthologs): licensing and KEGG tool-help , kegg-index-license , licence , kofamscan	2	26	May 15, 2026
Kraken2 databases question reference-index , tool-help , kraken2	1	24	April 29, 2026
Samtools index not visible in galaxy troubleshooting , datatype	1	18	April 29, 2026
[samtools fixmate] memory allocation error usegalaxy.org.au support filter-bam , exceeds-memory-error , samtools_fixmate	5	26	April 27, 2026
Unfold bug, missing newline char text-manipulation , tool-help , tp_unfold_column_tool	3	26	April 27, 2026
Panaroo error - missing dependancies? usegalaxy.org.au support troubleshooting , tool-help , panaroo	9	118	April 27, 2026
Panaroo error with GFF3 input TIP: include .gff in the file names and collection identifiers usegalaxy.eu support tool-help , panaroo	1	45	April 26, 2026
Hosting to UCSC with Custom Builds usegalaxy.org support galaxy-local , troubleshooting	5	23	April 25, 2026
quality string - read length problems in Cutadapt output usegalaxy.eu support troubleshooting , quality-control	3	341	April 24, 2026
Action requires account activation usegalaxy.org support account , resources	3	35	April 24, 2026
Stuck in queue SPAdes usegalaxy.org support spades , tool-help	1	26	April 24, 2026
Hyperparameter search missing option usegalaxy.org support gtn-tutorial , tool-help , sklearn_searchcv	3	25	April 24, 2026
MaxQuant probelm usegalaxy.eu support maxquant	1	16	April 24, 2026
Installing a new tool usegalaxy.eu support tool-dev	8	44	April 23, 2026
IQ-TREE configuration: consensus tree creation with 5 newick tree files usegalaxy.eu support tool-help , phylogeny , iqtree	10	47	April 22, 2026
Bacteria community and Antibiotic Resistance Gene workflow	1	14	April 22, 2026
Request Adding Salmonella cgMLST (3002 loci) scheme for CoreProfiler allele_calling usegalaxy.org support reference-index , coreprofiler_allele_calling	1	44	April 22, 2026
Issue at RNA-STAR step: adjusting GTF annotation usegalaxy.org support mapping , transcriptomics , tool-help , rna_star	3	29	April 22, 2026
Jobs Stuck processing with a workflow: Using the job cache to rerun workflows with canceled outputs usegalaxy.eu support workflow , troubleshooting , queued-gray-datasets , workflow-options , resources	3	40	April 21, 2026
RNA-STAR has been queued queued-gray-datasets	2	433	April 21, 2026
Issue with file upload and missing history data on Galaxy storage-dashboard	1	24	April 20, 2026