Galaxy Community Help

Topic	Replies	Views	Activity
My sample for MarkDuplicates is not running queued-gray-datasets	1	11	February 26, 2026
Metabolomics data analysis issue metabolomics , workflow4metabolomics	3	23	February 26, 2026
Troubleshooting: qiime2 feature-classifier fit-classifier-naive-bayes usegalaxy.eu support troubleshooting , qiime2 , qiime2__feature_classifier__fit_classifier_naive_bayes	4	42	February 26, 2026
Kraken2 Database Addition GTDB v220 usegalaxy.eu support troubleshooting	5	113	November 5, 2025
GROMACS Solvation Step High Throughput Molecular Dynamics and AnalysisTutorial usegalaxy.org support gromacs	3	45	February 25, 2026
featureCounts not giving single count files from multiple BAm files usegalaxy.org support tool-help , featurecounts	1	22	February 25, 2026
Shovill producing blank contig graph file: Use Galaxy Version 1.1.0+galaxy2 usegalaxy.eu support troubleshooting , tool-help , shovill	7	53	February 25, 2026
Qiime2 Import 2025.10 errors: Standardize your fastq sequence names usegalaxy.eu support resources , tool-help , qiime2_core__tools__import	7	118	February 25, 2026
Need help using the qiime2 tools import function usegalaxy.org support qiime2 , qiime2_core__tools__import	2	45	February 25, 2026
Unable to import my files as .qza usegalaxy.org support qiime2_core__tools__import	4	132	February 25, 2026
the metadata and error of qiime2 import usegalaxy.org support qiime2 , qiime2_core__tools__import	4	115	February 25, 2026
qiime2 tools import collections , tool-help , qiime2 , qiime2_core__tools__import , collection-shape	8	655	February 25, 2026
Built-in reference dataset dada2 is missing usegalaxy.eu support microgalaxy	2	574	February 25, 2026
BUSCO + miniprot fails with No such file or directory usegalaxy.org support usegalaxyorg , busco , usegalaxy-ca	3	40	February 24, 2026
Blast is not returning taxonomy results: Fetch Taxonomic Ranks usegalaxy.eu support mapping , blast , server-open-issue , gi2taxonomy	8	57	February 24, 2026
remuRNA Fatal error: Exit code 127 () usegalaxy.eu support troubleshooting , server-open-issue , remurna	1	16	February 24, 2026
Can't make miRDeep2 Quantifier work usegalaxy.org support troubleshooting , tool-help , rbc_mirdeep2 , rbc_mirdeep2_mapper , rbc_mirdeep2_quantifier	3	20	February 20, 2026
Deepvariant analysis failed to complete: How to confirm reference genome choices usegalaxy.org support tool-help , deepvariant	2	32	February 20, 2026
Kraken2 not working? usegalaxy.org.au support queued-gray-datasets , server-status	2	21	February 20, 2026
Genome update sus scro: how to use a custom genome! usegalaxy.org support reference-index , custom-genome , troubleshooting , reference-annotation , reference-genome , custom-build	2	36	February 19, 2026
GTDB-Tk Classify genomes - missing database gtdbtk_classify_wf	3	25	February 18, 2026
Transcriptomics in Galaxy: Overview, Guides, Production Workflows gtn-tutorial , troubleshooting , transcriptomics , resources	3	33	February 18, 2026
This job was terminated because it used more memory than it was allocated. How to troubleshoot! usegalaxy.org support troubleshooting , exceeds-memory-error	1	25	February 17, 2026
From Peaks To Genes Tutorial UCSC Main Errord usegalaxy.eu support troubleshooting	1	15	February 17, 2026
ChIP sequencing usegalaxy.org support troubleshooting , transcriptomics , usinggalaxy	1	21	February 16, 2026
PLINK bed/bim/fam files are only downloadable as html/tabular/text files usegalaxy.eu support datatype , tool-help , plink	3	33	February 16, 2026
GSE accession upload creates grey datasets with 0 pairs on usegalaxy.org usegalaxy.org support upload , ena_upload , ebi_sra_main	1	21	February 16, 2026
Account Activation usegalaxy.org support account	1	170	February 16, 2026
Wrapper: output file depending on input field, how to "make the link" development-tools	7	39	February 13, 2026
BWA-MEM2 input file naming usegalaxy.org support custom-genome , igv , tool-help , bwa_mem2	2	28	February 13, 2026