Topics tagged picard_markduplicates

Topic	Replies	Views	Activity
ATAC-Seq Analysis Using MACS2 Callpeak usegalaxy.org support gtn-tutorial , atac-seq , picard_markduplicates	3	338	August 25, 2025
MarkDuplicates- inadequate memory filter-bam , picard , exceeds-memory-error , tool-help , picard_markduplicates	1	64	February 10, 2025
Can't unpause job usegalaxy.org support queued-gray-datasets , paused-jobs , picard_markduplicates	4	69	March 17, 2026
ATAC-seq Analysis Using MACS2 Callpeak usegalaxy.org support troubleshooting , picard_markduplicates	2	102	November 13, 2024
error: more sample fields than samples listed in header samples variant-analysis , picard_markduplicates	1	652	December 21, 2023
paired-end histogram failure usegalaxy.org support custom-genome , igv , dropbox , picard_markduplicates	4	303	March 17, 2026
Can use BWA-MEM to concatenated files troubleshooting , mapping , picard_markduplicates	2	899	December 20, 2023
picard MarkDuplicates optical_duplicate_pixel_distance capped at 500 in GUI development-tools , picard_markduplicates	1	552	January 13, 2023
Problems Adding Tags to Elements usegalaxy.org support collections , tags , picard_markduplicates	2	947	December 20, 2022
MACS2 scientific result troubleshooting troubleshooting , macs2 , chip-seq , mapping , blast , filter-bam , igv , fastqsanger , epigenetics , picard_markduplicates	6	926	June 16, 2022
Plotfingerprint (to check the strength IP in chip) picard_markduplicates	0	314	April 25, 2022
Deduplication for miRNA analysis usegalaxy.org support mirna , picard_markduplicates	4	1001	September 27, 2021
PICARD_MARK DUPLICATES_ high % NON-OPTICAL DUPLICATES transcriptomics , rna_star , picard_markduplicates	0	641	July 28, 2021
Indexing reference genomes with Data Managers: Resources, tutorials, troubleshooting galaxy-local , data-manager , picard_markduplicates	28	7963	July 7, 2021
What tools approprite for remove duplicate reads from BAM file in Usegalaxy troubleshooting , mapping , usinggalaxy , quality-control , picard_markduplicates	4	2017	March 17, 2026
OPTICAL_DUPLICATE_PIXEL_DISTANCE in MarkDuplicates tool usegalaxy.org support picard_markduplicates	0	400	January 27, 2021
Alternative tool for split'N'trim usegalaxy.org support variant-analysis , snpeff , picard_markduplicates	0	448	May 17, 2020
Fix a workflow for Variant calling from WGS data upon mutagenesis-screen snpeff , picard_markduplicates	2	717	May 1, 2020
Conda installation requested and failed in local galaxy devops-administration , tool-install , galaxy-local , visualization , picard_markduplicates	8	2626	April 2, 2020
High unassigned ambiguity counts for featureCounts data on bacterial transcriptomics usegalaxy.org support picard_markduplicates	2	1948	March 25, 2020
BamLeftAlign error unable to find fasta index -- use "fasta" version of genome or natively indexed genome custom-genome , galaxy-local , data-manager , picard_markduplicates	22	3124	July 18, 2019
java.lang.OutOfMemoryError, Mark Duplicates in Picard indexer builder exceeds-memory-error , picard_markduplicates	2	1453	June 3, 2019
Error with markduplicates tool picard_markduplicates	0	800	May 22, 2019
[Bug] Duplication of Datasets After Collection Zip picard_markduplicates	8	908	December 18, 2018