Galaxy Community Help

Topic	Replies	Views	Activity
How to get faster help with your question share-or-publish , troubleshooting , resources How to get faster help with your question We love details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Questions with details attract the fastest replies! Pleas…	5	742	May 16, 2025
What should I do if my data exceeds the given 250GB of storage? account , storage-dashboard , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	1545	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10942	April 17, 2024
HUMAnN/MetaPhlAn error usegalaxy.eu support troubleshooting , microgalaxy	3	6	July 15, 2025
Classify Contigs to reference sequences usegalaxy.org support	4	7	July 15, 2025
Reference genome not loading in RNA Star usegalaxy.org support troubleshooting , tool-help	0	1	July 15, 2025
🔧 gunicorn.sock not created despite Galaxy running — and dependency_resolvers_conf.xml missing server-admin	11	28	July 15, 2025
GATK4 Mutect2 Syntax Error usegalaxy.org support gatk4	1	2	July 15, 2025
pulsar does not stage blastdb in Galaxy History for NCBI blastn run server-admin	3	26	July 14, 2025
Galaxy 25_0 on GCE, Microarray Tissue Analysis tutorial, ImageJ installation server-admin	15	18	July 14, 2025
Manta turn off depth option does not seem to work properly usegalaxy.eu support tool-dev , tool-help	5	9	July 14, 2025
More memory than allocated error - diffbind usegalaxy.org support diffbind	4	6	July 14, 2025
incomplete annotation with maker usegalaxy.org support fasta-manipulation	3	9	July 14, 2025
trimAl_use_inputfiel usegalaxy.eu support tool-help , trimal	1	11	July 14, 2025
Interactive BlobToolKit server-open-issue , tool-help , blobtoolkit , interactive_tool_blobtoolkit	4	12	July 14, 2025
Data not purging storage-dashboard	1	3	July 14, 2025
Converting command line awk to Galaxy tool-help , tp_awk_tool	1	359	July 13, 2025
Trinotate SQLite boilerplate unavailable on usegalaxy.eu? usegalaxy.eu support troubleshooting , tool-help , trinotate	2	6	July 12, 2025
Problems downloading some collections from .eu usegalaxy.eu support download	5	46	July 12, 2025
No dataset pair dataset collections with fastqsanger or fastqsanger.gz elements available tool-help , fastp	1	3	July 11, 2025
GeNomad database usegalaxy.org support reference-index	7	49	July 11, 2025
Downloading hg19/GRCh37 SnpEff database into history snpeff	1	6	July 11, 2025
Scanpy FindVariableGenes tool-help , scanpy_find_variable_genes	1	16	July 11, 2025
BiG-SCAPE issue usegalaxy.eu support tool-help , bigscape	1	3	July 11, 2025
NanoFilt Tool - Galaxy usegalaxy.eu support single-cell , quality-control	3	10	July 11, 2025
Error in generating bigwig file after running macs2 usegalaxy.org support macs2	4	12	July 11, 2025
FASTA Filter tool error	9	47	July 11, 2025
CREx_rearrangement scenario tool-help , revoluzer_crex	2	6	July 11, 2025
From Blast to Tree usegalaxy.org support troubleshooting	1	7	July 10, 2025
Help with instructions for running Galaxy in our Institute's cluster. usegalaxy.org support galaxy-local , cluster	1	8	July 10, 2025

How to get faster help with your question

share-or-publish , troubleshooting , resources

How to get faster help with your question We love details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Questions with details attract the fastest replies! Pleas…

5

742

May 16, 2025

What should I do if my data exceeds the given 250GB of storage?

account , storage-dashboard , resources , manage-quota , scratch-space

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

1545

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10942

April 17, 2024

HUMAnN/MetaPhlAn error

usegalaxy.eu support

troubleshooting , microgalaxy