usegalaxy.org support

Topic	Replies	Views	Activity
Issues with errors, data expiration, and account synchronization troubleshooting	1	68	May 12, 2025
duplicate username on toolshed toolshed	1	40	May 9, 2025
Bowtie2 Mapping Issues mapping	5	118	May 7, 2025
Demultiplexing option(s) for Porechop (Galaxy Version 0.2.4+galaxy1) tool-help , porechop	2	147	May 2, 2025
SNPEff eff job error troubleshooting , snpeff	2	59	May 1, 2025
Extracting feature sequences with gene ID information text-manipulation , bedtools_getfastabed	3	213	May 1, 2025
how to constitute input files to use KSNP4?	3	61	May 1, 2025
Strand bias and placement bias in variant calls	2	106	May 1, 2025
Galaxy's Maxquant problem proteomics , tool-help , maxquant	2	134	April 30, 2025
Running Interactive Jupyter Notebook - Galaxy could not be reached jupyter	3	73	April 30, 2025
Problem After Link Modification in Jupyter Notebook interactive_tool_jupyter_notebook	1	27	April 29, 2025
HISAT2 and RNA STAR reference genomes custom-genome , transcriptomics , reference-genome , custom-build	2	61	April 25, 2025
IsoformSwitchAnalyzeR Import Data: Memory Allocation gtn-tutorial , transcriptomics	6	109	April 25, 2025
Dataset Download error share-or-publish	1	36	April 25, 2025
How can I upload the workflow to public workflow, either through an interface or manually workflow , iwc-workflows	1	62	April 21, 2025
How to delete very old purged histories? storage-dashboard	6	135	April 17, 2025
unable to do trimming and taking out the primers quality-control , microgalaxy	1	50	April 16, 2025
Adding a reference genome to map RNAseq contig custom-genome , transcriptomics	1	40	April 16, 2025
Problems regarding file upload in DeSeq2 tool-help , deseq2	6	154	April 15, 2025
Error with FeatureCounts transcriptomics	5	146	April 14, 2025
How to extract count matrix from BAM files of scRNA-seq experiment in Galaxy Server? single-cell , rna-seq , featurecounts	1	208	April 10, 2025
need help with Falco tool transcriptomics	2	82	April 9, 2025
How do you use MultiQC on FastQC files taken from SRA files? multiqc , quality-control	1	3191	December 10, 2018
All tools fail immediately — FastQC and others return "There is no context to provide a response	2	69	April 7, 2025
Uploading not working Direct upload and File Transfer history-transfer , upload	6	184	April 7, 2025
NCBI BLAST+ blastn- no destination tool-help , ncbi_blastn_wrapper	1	35	April 4, 2025
DiffBind analysis tool-help , diffbind	1	80	April 5, 2025
Error with HISAT2 transcriptomics	3	69	April 3, 2025
Cannot "export history to file" history-transfer , troubleshooting , server-open-issue	12	145	April 3, 2025
Loading sqlite database file onto RStudio troubleshooting	1	44	April 1, 2025