Galaxy Community Help

Topic	Replies	Views	Activity
Tools for concatenating individually aligned loci into a supermatrix for downstream analysis usegalaxy.eu support maf-manipulations	2	61	November 13, 2025
Base mismatch in arabidopsis tair 10 ref genome usegalaxy.eu support reference-genome	3	49	November 12, 2025
Converting BAM files to FASTQ? troubleshooting	8	260	November 12, 2025
Change the default Activity Bar view devops-administration , galaxy-local	3	77	November 12, 2025
Spider plot error usegalaxy.eu support usinggalaxy , protologger	4	64	November 12, 2025
Reference genome using BWA-MEM usegalaxy.org support bwa-mem , reference-genome	4	101	November 11, 2025
[Beginner Question] Identifying Gene ID vs Protein ID transcriptomics	1	57	November 11, 2025
Map with minimap2 - paired end reads tool-help , minimap2	1	68	November 11, 2025
Limma not running issue usegalaxy.org support tool-help , limma_voom	1	29	November 10, 2025
Salmon quant error due to high number of threads and excess memory usage usegalaxy.org support tool-help , salmon	1	49	November 10, 2025
MAKER on galaxy runs out of local space usegalaxy.org support troubleshooting , genome-annotation , maker	3	58	November 10, 2025
Download and Extract Reads in FASTQ: Troubleshooting Fatal error: Exit code 2 () usegalaxy.org support upload , tool-help , fastq_dump	1	86	November 10, 2025
ENA submission receipt: Excel input formatting and troubleshooting usegalaxy.eu support troubleshooting , tool-help , ena_upload	9	237	November 10, 2025
QIIME 2 installed in Galaxy, but tools not appearing in the left panel (Mac mini M4 & Ubuntu) devops-administration , galaxy-local	7	105	November 8, 2025
Kraken2 not running usegalaxy.eu support queued-gray-datasets	10	114	November 8, 2025
Map with KMA using the parameter "-t_db" is not clear! usegalaxy.eu support server-open-issue , tool-help , kma_map	11	150	November 6, 2025
Upload files stuck in queue usegalaxy.org support upload , queued-gray-datasets	3	100	November 6, 2025
Request: Add host-decontamination tool (KneadData) or a comparable tool on Galaxy.eu for human shotgun metagenomics preprocessing usegalaxy.eu support workflow , mapping , tool-request , iwc-workflows , humann	2	114	November 6, 2025
Request to enable KEGG and Pfam databases: licensing and KEGG tool-help , dram_distill , dram_annotate , dram_merge_annotations , dram_strainer , dram_neighborhoods , humann , kegg-index-license	1	86	November 5, 2025
Error when running tool: ModuleNotFoundError: No module named 'pandas'. While pandas is in requirements usegalaxy.org support development-tools	6	76	November 5, 2025
Troubleshooting: fastq read content and shape. Collections, interlaced/interleaved reads, quality assurance usegalaxy.org support troubleshooting , quality-control , collection	7	171	November 5, 2025
Error using Intersect the intervals of two datasets (Galaxy Version 1.0.0) tool usegalaxy.org support tool-help , gops_intersect_1	2	37	November 3, 2025
BAM/SAM Mapping Stats mapping , transcriptomics , tool-help , rseqc_bam_stat	1	41	November 3, 2025
How do I create and visualize a nested paired list collections	1	33	November 3, 2025
Downloading abundance (frequency) table of ASVs usegalaxy.eu support tool-help , qiime2	3	38	November 3, 2025
Minimap2 accepted formats usegalaxy.eu support mapping , datatype-validation , datatype	1	26	November 3, 2025
Salmon Quant paired-end read entry usegalaxy.eu support troubleshooting , collections , resources	1	63	November 3, 2025
Cannot match collection types collections , cutadapt , tool-help , rna_star	2	60	November 2, 2025
Can`t find the tool "protologger" usinggalaxy , protologger , iwc-workflows	7	129	November 1, 2025
MiRDeep2 Mapper: TAIR10 reference genome usegalaxy.eu support tool-help , rbc_mirdeep2 , rbc_mirdeep2_mapper , rbc_mirdeep2_quantifier	3	99	October 31, 2025