Galaxy Community Help

Topic	Replies	Views	Activity
RetroPath2.0 fails to run and retrosynthesis workflow reports missing rpTools dependency usegalaxy.org support workflow , tool-help	1	37	December 16, 2025
Unable to receive emails with verification link; deleted the account and now unable to use same email again usegalaxy.org support account	1	59	December 16, 2025
Bismark Methyl Extractor with error usegalaxy.eu support tool-help , bismark_methylation_extractor	5	99	December 16, 2025
Where is the Gecko-mgv webpage? usegalaxy.eu support gtn-tutorial , tool-help , gecko	2	52	December 15, 2025
Is PED File necessary if working with data from one person? usegalaxy.org support gtn-tutorial , gemini , tool-help , gemini_load	1	36	December 15, 2025
GROMACS Initial Setup Error usegalaxy.eu support troubleshooting , resources , tool-help , gmx_setup , gromacs	3	68	December 15, 2025
GrowthPred troubleshooting galaxy-pasteur-fr , proteomics , usinggalaxy	3	52	December 15, 2025
DRAM usage problem usegalaxy.eu support troubleshooting , tool-help , dram_distill , dram_annotate , dram_merge_annotations , dram_strainer , dram_neighborhoods , humann	1	47	December 15, 2025
GO enrichment on up and down regulated genes on treated sample usegalaxy.eu support transcriptomics , resources	1	75	December 15, 2025
Hisat2 Disable Spliced Alignment or Not for DNA reads usegalaxy.eu support	5	66	December 15, 2025
Manipulate anndata remove keys/fields of the vars usegalaxy.org support tool-help , anndata_manipulate	1	28	December 13, 2025
Why .nwk file showed as .txt file in galaxy usegalaxy.eu support upload , tool-help , codeml	2	40	December 12, 2025
Can usegalaxy.eu provide latest Kraken2 core_nt databases? usegalaxy.eu support reference-index , kraken2	3	79	December 11, 2025
Not recognizing mothur .tax file usegalaxy.org support mothur	5	67	December 11, 2025
BUSCO error: refseq db not found usegalaxy.org support genome-annotation , resources , tool-help , busco	8	127	December 10, 2025
Request for the add of genome reference-index , custom-genome , custom-build , resources	1	28	December 10, 2025
BBTools: BBduk advanced options usegalaxy.org support tool-help , bbtools_bbduk	5	80	December 10, 2025
Workflow cannot be executed Uncaught exception in exposed API method usegalaxy.org support workflow , troubleshooting , transcriptomics	1	42	December 9, 2025
Choosing datafiles for DESeq2 usegalaxy.eu support collections , tags , resources , tool-help , deseq2 , select	3	183	December 9, 2025
Cannot find Function “Filter observations or variables” in Manipulate AnnData troubleshooting	4	82	December 9, 2025
Searching through Galaxy Libraries and Library Datasets effectively devops-administration , galaxy-local , data-library	2	59	December 9, 2025
Volcano plot error: Exit code 127 usegalaxy.org support troubleshooting , volcanoplot	4	66	December 9, 2025
Issues running GrowthPred with genomes galaxy-pasteur-fr , proteomics , usinggalaxy	3	526	September 23, 2022
HUMAnN database tool? tool-help , humann	1	35	December 8, 2025
Why MACS2 callpeak for Cut&Run analysis shows error? macs2 , reference-genome	3	69	December 8, 2025
Error when running molecular docking usegalaxy.org support tool-help	24	409	December 8, 2025
External tool link: open a new tab devops-administration , galaxy-local	3	63	December 8, 2025
HUMAnN Cached database with clade-specific marker genes devops-administration , reference-index , galaxy-local , humann	11	525	December 8, 2025
How to perform quality trimming without adapter removal in Cutadapt? transcriptomics , quality-control	1	50	December 8, 2025
Clarification on DESeq2 Factor Level Direction in Galaxy usegalaxy.eu support tool-help , deseq2	1	94	December 4, 2025