Galaxy Community Help

Topic	Replies	Views	Activity
Lost account? Confirm the correct server URL in your original account activation email! account	3	116	August 5, 2025
Help Needed: coverM Tool Fails with "mkdir: cannot create directory ‘single/’: File exists" Error usegalaxy.eu support troubleshooting , coverm_genome , coverm_contig	1	47	August 5, 2025
Shovill, several day run/queue for some run usegalaxy.eu support queued-gray-datasets	1	48	August 5, 2025
Problem with STARsolo chimeric alignments output as separate tabular junctions in Galaxy Resources workflow , transcriptomics , tool-help , single-cell , rna_starsolo	1	42	August 5, 2025
How to construct input dict when running a tool in Galaxy externally through API? Resources tool-help	1	44	August 5, 2025
Alleyoop - unable to select dataset collections for bam, tsv, and vcf files collections , browse-upload-files	3	49	August 5, 2025
Getting information from database usegalaxy.eu support troubleshooting	1	38	August 5, 2025
Newly launched BN rat genome assembly GRCr8 into the reference genome list? usegalaxy.eu support reference-index , custom-genome , reference-annotation , reference-genome	1	50	August 5, 2025
Asking about qiime2 tools import Resources tool-help , qiime2_core__tools__import	1	102	August 5, 2025
Funanotate missing depencies usegalaxy.eu support	3	75	August 5, 2025
insight using Paraview interactive tool usegalaxy.eu support tool-help	4	96	August 5, 2025
Goseq tool not working usegalaxy.org support goseq	1	45	August 5, 2025
Goseq Overlapping names of GO terms rstudio , goseq	1	64	August 5, 2025
Install failure, how to restart / recover / retry ssl3_read_bytes "bad record mac" error devops-administration , galaxy-local	1	63	August 5, 2025
HiCUP Runtime and Tool Recommendations for Hi-C Analysis usegalaxy.eu support workflow , queued-gray-datasets , iwc-workflows	1	45	August 5, 2025
BRAKER3：There is an error with this dataset. usegalaxy.eu support	1	52	August 4, 2025
SLURM job resource requests ignored (CPU/memory/time) on Galaxy + Azure CycleCloud setup devops-administration , job-config , galaxy-local	1	49	August 4, 2025
assembly with flye	1	46	August 4, 2025
ATAC Seq wig to bigwig transformation of MACS2 data Resources workflow , tool-help	8	169	August 4, 2025
kMetaShot install Resources devops-administration , development-tools , tool-help	1	46	August 4, 2025
Queue pauses as soon as starting RNA star tool and won't resume usegalaxy.org support	9	108	August 4, 2025
NanoGalaxy not responding – stuck uploads and no job execution usegalaxy.eu support upload , server-status	4	72	August 3, 2025
Kraken2 Job Fails Repeatedly on Galaxy Resources devops-administration , tool-help	2	62	July 30, 2025
Jobs not running (including file upload) - fastq files usegalaxy.eu support upload , queued-gray-datasets , server-status	5	117	July 29, 2025
Genomad incorrect option usegalaxy.org support development-tools	1	44	July 29, 2025
Salmonquant job keeps on queuing with random sets start running usegalaxy.org support queued-gray-datasets	1	43	July 29, 2025
Adding a New Reference Genome for Cannabis sativa usegalaxy.org support custom-genome , reference-annotation , reference-genome	1	55	July 29, 2025
Delays at UseGalaxy.eu after maintenance usegalaxy.eu support server-status	1	60	July 29, 2025
Galaxy Europe maintenance - 48 hrs downtime between 18:30 (CEST) on Fri, July 25 and 19:00 (CEST) on Sun, July 27 usegalaxy.eu support usinggalaxy , server-status	1	132	July 27, 2025
Issue with "Insert Indel Qualities" Step in Galaxy Training Material after recent upgrade usegalaxy.org support variant-analysis	2	55	July 26, 2025