Galaxy Community Help

Topic	Replies	Views	Activity
FROGS analysis and Phyloseq troubleshooting , usegalaxy-fr	2	213	August 29, 2025
MITOS2 error can't run job Resources tool-help , mitos2	3	69	August 29, 2025
Panaroo error - missing dependancies? usegalaxy.org.au support troubleshooting	7	97	August 28, 2025
Convert GTF to BED12 Resources tool-help , gtftobed12	1	56	August 28, 2025
Running MiRDeep2 with pooled reads from MiRDeep2 Mapper troubleshooting , mapping , mirna , rbc_mirdeep2	4	76	August 28, 2025
Maker genome annotation pipeline (Galaxy Version 2.31.11+galaxy2) running for weeks usegalaxy.eu support troubleshooting , queued-gray-datasets , genome-annotation	5	63	August 28, 2025
Is Galaxy Server down? usegalaxy.org support	3	76	August 28, 2025
"Galaxy could not be reached" UseGalaxy.org August 28 2025 service restored devops-administration , server-status	1	66	August 28, 2025
DADA2 Merge Pairs troubleshooting Resources tool-help , dada2_mergepairs	1	56	August 27, 2025
Missing tools from the ASAIM MT workflow usegalaxy.eu support microgalaxy , humann	1	22	August 26, 2025
Usegalaxy France - Compress Files does not work usegalaxy.org support usegalaxy-fr	5	64	August 26, 2025
iPHoP job running for 6+ days on Galaxy Europe (880 genomes) usegalaxy.eu support troubleshooting , queued-gray-datasets	3	58	August 26, 2025
Random empty output files devops-administration , galaxy-local	8	100	March 17, 2026
ATAC-Seq Analysis Using MACS2 Callpeak usegalaxy.org support gtn-tutorial , atac-seq , picard_markduplicates	3	332	August 25, 2025
Blast issue when trying to add species name: Fetch Taxonomic Ranks usegalaxy.org support mapping , blast , tool-help , gi2taxonomy	4	97	August 25, 2025
Asking for unmapped genes in RNA sequencing via Galaxy troubleshooting , mapping , transcriptomics , resources , rna_star	1	30	August 25, 2025
Implement/enable "Manage Your Remote File Sources" on local version of galaxy usegalaxy.org support devops-administration , resources	3	47	August 24, 2025
MaAsLin2 job fails due to glmmTMB / TMB version mismatch Resources troubleshooting , tool-help , maaslin2	2	30	August 21, 2025
Flye giving error with bacterial genome Resources assembly , tool-help	1	48	August 21, 2025
Eukaryote (Fasciola gigantica) assembly Resources assembly , resources , iwc-workflows	1	34	August 20, 2025
Cannot connect to usegalaxy.eu using Firefox usegalaxy.eu support server-status	1	28	August 19, 2025
Help with RNA Star, Featurecounts, and reference annotation choices Resources transcriptomics , reference-annotation , resources , featurecounts , iwc-workflows	1	150	August 19, 2025
GTN Transcriptomics Hands-on: Genome-wide alternative splicing analysis. Troubleshooting reference data choices! Resources transcriptomics , reference-genome , resources , tool-help , reference-transcriptome , rna_quast	27	334	August 19, 2025
Planemo, docker, python: issue with getting args passed to the script devops-administration , development-tools , galaxy-local	6	73	March 17, 2026
Free energy landsape using Bio3d in galaxy Resources comp-chemistry , tool-help , bio3d_pca	5	116	August 18, 2025
Writing proper tests for a dynamic collection created through the discover_datasets tag usegalaxy.eu support development-tools	1	26	August 18, 2025
Using Arriba for Fusion detection on Galaxy usegalaxy.org support	3	48	August 15, 2025
SLURM job resource requests ignored (CPU/memory/time) on Galaxy + Azure CycleCloud setup devops-administration , job-config , galaxy-local	7	122	March 17, 2026
Question about UMI-tools extract: different version from the tutorial? Resources tool-help , umi_tools_extract	3	86	August 13, 2025
msConvert can't proceed due to wine64: command not found usegalaxy.eu support troubleshooting	7	80	August 13, 2025