Galaxy Community Help

Topic	Replies	Views	Activity
Incompatibility of the Salmon tool on the Belgian Galaxy server server-admin	1	14	December 23, 2025
Resolved: Kraken2 temporary cluster failure usegalaxy.org support usegalaxyorg , kraken2	4	36	December 23, 2025
TMHMM 2.0 is outdated, can we add DeepTMHMM? usegalaxy.eu support tool-dev , tool-help , tmhmm_and_signalp	1	26	December 23, 2025
NCBI BLAST+ blastx and blastp cannot work with new nr_2025-12-03 usegalaxy.eu support tool-help , ncbi_blastx_wrapper	1	16	December 23, 2025
Is IQ-TREE currently functional? usegalaxy.org support troubleshooting , queued-gray-datasets	4	23	December 23, 2025
Error in using Bowtie2 troubleshooting , mapping , collections , resources	2	34	December 18, 2025
Job seems stuck for RNA STAR usegalaxy.org support queued-gray-datasets	1	19	December 18, 2025
Admin in local installation impossible to make work galaxy-local	1	21	December 18, 2025
LotuS2 Pipeline OTUs/ASVs usegalaxy.org.au support tool-help , lotus2	3	29	December 18, 2025
Release of Galaxy 25.1 News & Updates release	1	34	December 17, 2025
Qiime2 Import 2025.10 errors: Standardize your fastq sequence names usegalaxy.eu support resources , tool-help , qiime2_core__tools__import	3	46	December 17, 2025
RetroPath2.0 fails to run and retrosynthesis workflow reports missing rpTools dependency usegalaxy.org support workflow , tool-help	1	22	December 16, 2025
Unable to receive emails with verification link; deleted the account and now unable to use same email again usegalaxy.org support account	2	29	December 16, 2025
Bismark Methyl Extractor with error usegalaxy.eu support tool-help , bismark_methylation_extractor	5	38	December 16, 2025
Where is the Gecko-mgv webpage? usegalaxy.eu support gtn-tutorial , tool-help , gecko	2	20	December 15, 2025
Is PED File necessary if working with data from one person? usegalaxy.org support gtn-tutorial , gemini , tool-help , gemini_load	1	26	December 15, 2025
GROMACS Initial Setup Error usegalaxy.eu support troubleshooting , resources , tool-help , gmx_setup , gromacs	3	43	December 15, 2025
GrowthPred troubleshooting galaxypasteurfr , proteomics	3	28	December 15, 2025
DRAM usage problem usegalaxy.eu support troubleshooting , tool-help , dram_distill , dram_annotate , dram_merge_annotations , dram_strainer , dram_neighborhoods	1	17	December 15, 2025
GO enrichment on up and down regulated genes on treated sample usegalaxy.eu support transcriptomics , resources	1	34	December 15, 2025
Hisat2 Disable Spliced Alignment or Not for DNA reads usegalaxy.eu support	5	32	December 15, 2025
Manipulate anndata remove keys/fields of the vars usegalaxy.org support tool-help , anndata_manipulate	1	15	December 13, 2025
Why .nwk file showed as .txt file in galaxy usegalaxy.eu support upload , tool-help , codeml	2	12	December 12, 2025
Can usegalaxy.eu provide latest Kraken2 core_nt databases? usegalaxy.eu support reference-index , kraken2	3	43	December 11, 2025
Not recognizing mothur .tax file usegalaxy.org support mothur	5	25	December 11, 2025
BUSCO error: refseq db not found usegalaxy.org support genome-annotation , resources , tool-help , busco	8	62	December 10, 2025
Request for the add of genome reference-index , custom-genome , custom-build , resources	1	15	December 10, 2025
BBTools: BBduk advanced options usegalaxy.org support tool-help , bbtools_bbduk	5	34	December 10, 2025
Workflow cannot be executed Uncaught exception in exposed API method usegalaxy.org support workflow , troubleshooting , transcriptomics	1	23	December 9, 2025
Choosing datafiles for DESeq2 usegalaxy.eu support collections , tags , resources , tool-help , deseq2 , select	3	70	December 9, 2025