Galaxy Community Help

Topic	Replies	Views	Activity
BRAKER3 fails with ‘Genemark’ error braker3	1	19	March 22, 2026
ExomeDepth Column gene usegalaxy.org support bed , text-manipulation , data-manipulation	3	388	March 31, 2026
Workflow extraction issue usegalaxy.org support workflow , workflow-extract	11	1310	March 20, 2026
Trimmomatic error when running SRA data usegalaxy.eu support troubleshooting	1	17	March 20, 2026
Encountered locale error when running edgeR usegalaxy.org support edger	1	13	March 19, 2026
Ouput unaligned reads into bam file with hisat2 usegalaxy.eu support mapping , transcriptomics , tool-help , hisat2	1	17	March 18, 2026
Error in SnpSift tool due to token ANN interpretation and out of memory usegalaxy.eu support snpsift_filter	3	21	March 18, 2026
You are not allowed to access this dataset usegalaxy.eu support share-or-publish	1	12	March 18, 2026
Error while running Humann usegalaxy.eu support troubleshooting	5	20	March 18, 2026
Galaxy EU Server: Downtime March 16, 17 2026 usegalaxy.eu support server-status	2	37	March 18, 2026
Galaxy Loading Super Slow usegalaxy.org support server-status	4	41	March 17, 2026
Download genome into Galaxy usegalaxy.org support reference-genome , resources	11	3700	March 17, 2026
Put() not working in jupyter notebook on local server devops-administration , galaxy-local , release-testing	7	15	March 17, 2026
Failed to find virtualenv when building galaxy from ansible tutorial devops-administration , galaxy-local , virtualenv	13	40	March 17, 2026
Need help running snippy for bacterial genome usegalaxy.org support server-open-issue , snippy	2	19	March 17, 2026
Problem with Helixer usegalaxy.org support server-open-issue , helixer	2	13	March 16, 2026
RStudio troubleshooting troubleshooting , rstudio	2	2	March 16, 2026
Missing genes in eggNOG-mapper output while present in input FASTA usegalaxy.eu support tool-help , eggnog_mapper_annotate	3	26	March 16, 2026
Taxonomic classification using Kraken2 reference-index , kraken2	2	30	March 16, 2026
Cluster on intervals error usegalaxy.eu support troubleshooting	5	24	March 16, 2026
Cannot connect to Galaxy usegalaxy.org support server-status	8	568	March 16, 2026
Error in SnpEff version usegalaxy.eu support variant-analysis , snpeff	4	19	March 14, 2026
GOEnrichment support usegalaxy.eu support tool-help , goenrichment	1	3	March 13, 2026
MITOS2 missing reference data usegalaxy.eu support tool-help , mitos2	1	7	March 13, 2026
Align structures and compute relative RMSDs tool-help , biopdb_align_and_rmsd	1	6	March 12, 2026
Bowtie2 mapping output usegalaxy.eu support troubleshooting , mapping	4	19	March 12, 2026
NCBI Eukaryotic Genome Annotation Pipeline (EGAP) development-tools , genome-annotation	4	9	March 11, 2026
Bug error from metabolomics workflows usegalaxy.eu support troubleshooting	1	12	March 11, 2026
Question about interproscan usegalaxy.eu support tool-help , interproscan	9	14	March 10, 2026
Troubleshooting barrnap tool-help , barrnap	1	9	March 10, 2026