Galaxy Community Help

Topic	Replies	Views	Activity
Conversion from scRNA-seq files to bam files usegalaxy.org support transcriptomics	1	14	August 24, 2024
Volcano Plot_problem of image layout tool-help , volcanoplot	1	14	August 24, 2024
Galaxy Admin Tutorial: TUSd not installing/working? usegalaxy.org support server-admin , gtn-tutorial , galaxy-local , troubleshooting	2	17	August 23, 2024
I am using HISAT2, but my reference genome Rickettsia rickettsii is missing in the dropdown list. custom-genome , mapping , custom-build	15	42	August 23, 2024
Map with minimap2 usegalaxy.eu support tool-help , single-cell , minimap2	2	20	August 21, 2024
nf-core Pipeline Integration to Local Galaxy workflow , tool-dev , planemo	2	31	August 21, 2024
JupyterLab shutdown after 24 hours of run. usegalaxy.org support jupyter , interactive-tools	4	15	August 19, 2024
Please run Megablast as an option with BLASTN usegalaxy.eu support mapping , blast , tool-help , ncbi_blastn_wrapper , megablast_wrapper	8	29	August 18, 2024
List with zero data sets in Limma voom usegalaxy.org support transcriptomics , tool-help , limma_voom	10	30	August 18, 2024
Problem converting Wig to BigWig file troubleshooting	5	20	August 17, 2024
MetaWRAP in Galaxy tool-help , metawrapmg_binning	6	15	August 15, 2024
Help with TPM values usegalaxy.org support transcriptomics	2	9	August 15, 2024
TPM value calculation usegalaxy.org support	2	5	August 15, 2024
Filter data on any column using simple expressions text-manipulation , tool-help , cut1 , tp_cut_tool , filter1 , tp_awk_tool , grep1 , tp_sed_tool	4	2185	May 14, 2021
About DESeq2 Errors usegalaxy.org support transcriptomics , deseq2 , featurecounts	1	13	August 14, 2024
Circexplorer2 runtime usegalaxy.eu support queued-gray-datasets	5	68	August 14, 2024
Circexplorer 2 over a week to execute and still running	4	21	August 14, 2024
Remove installed databases reference-index , galaxy-local , data-manager	2	25	August 14, 2024
Krocus Database usegalaxy.eu support tool-help , mlst_list , mlst , krocus	2	10	August 14, 2024
"Extract Genomic DNA" tool usegalaxy.eu support tool-help , bedtools_getfastabed , extract-genomic-dna-1	2	18	August 13, 2024
Genome index STAR transcriptomics	1	8	August 13, 2024
SICER is not available for the genome. reference-index , custom-genome , reference-genome , custom-build , tool-help , peakcalling_sicer	1	5	August 13, 2024
Number of significantly discriminative features: 311 ( 311 ) before internal wilcoxon lefse , galaxy-huttenhower	3	12	August 13, 2024
STAR --genomeDir option usegalaxy.org support reference-index	1	8	August 13, 2024
Bowtie2 brucella reference usegalaxy.eu support custom-genome , custom-build , tool-help	1	9	August 13, 2024
use Create DBKey and Reference Genome to define new entries galaxy-local	5	15	August 13, 2024
How to make fasta file in a single sequence read like a reference genome? assembly	1	5	August 13, 2024
Reference Genome & Reference Transcriptome as ASCII code! upload , fasta-manipulation , datatype	3	12	August 13, 2024
nextflow as a galaxy module? workflow , galaxy-local	2	340	August 13, 2024
Running nextflow nfcore pipelines using a singularity tool-dev , galaxy-local , epigenetics	6	1366	August 13, 2024