Galaxy Community Help

Topic	Replies	Views	Activity
MiRDeep2 Mapper: TAIR10 reference genome usegalaxy.eu support tool-help , rbc_mirdeep2 , rbc_mirdeep2_mapper , rbc_mirdeep2_quantifier	3	99	October 31, 2025
Planemo No such file or directory: '<home>/.planemo/gx_venv_3/bin/galaxyctl' planemo	1	43	October 30, 2025
Jupyter notebook tutorial - no space left error when importing libraries usegalaxy.org support troubleshooting	4	85	October 30, 2025
GalaxyEurope storage not refreshing usegalaxy.eu support troubleshooting , storage-dashboard	1	46	October 30, 2025
Assistance Required: Missing Tools from Galaxy ToolShed devops-administration , galaxy-local , toolshed	1	26	October 30, 2025
GATK4 Mutect2 error - SyntaxError - invalid syntax devops-administration , galaxy-local , gatk4	1	51	October 30, 2025
Is W4M under maintenance? usinggalaxy , workflow4metabolomics	1	17	October 29, 2025
Jobs keep pausing in usegalaxy.org support upload , troubleshooting	5	116	October 29, 2025
Diamond UniRef90 tool-help , bg_diamond , humann	4	78	October 29, 2025
Troubleshooting for an error in Galaxy Training Materials "reference based RNA seq data analysis" usegalaxy.org.au support mapping	1	80	October 29, 2025
Upload data directly into a collection! Solves: No compatible list of pairs dataset collections available spades	7	189	October 28, 2025
Error loading population file in Stacks: Reference map - Reference-based RAD-seq Tutorial usegalaxy.org support gtn-tutorial , tool-help , stacks2_populations	1	33	October 28, 2025
16S-DADA2 problems queued-gray-datasets	1	48	October 28, 2025
Suggestions for Reliable Alternative Splicing Workflow in Galaxy? usegalaxy.org support transcriptomics	1	42	October 27, 2025
Download and Extract reads in FASTQ format from NCBI SRA in workflow issue usegalaxy.org support troubleshooting , transcriptomics , collections , tool-help , collection-shape	5	289	October 27, 2025
Error: Convert GTF to BED12 usegalaxy.eu support tool-help , gtftobed12	1	22	October 27, 2025
Adding material to Galaxy Training training	1	22	October 27, 2025
GROMACS NVT & NPT energy equilibration not available anymore usegalaxy.eu support gromacs	1	16	October 27, 2025
rMATS in Docker Galaxy troubleshooting troubleshooting , rmats	4	91	October 24, 2025
Converting fastq to fasta for analysis with ABRicate or AMRFinderPlus usegalaxy.eu support troubleshooting , tool-help , abricate	4	109	October 23, 2025
Removing PCR duplicates in GStacks2, galaxy.eu tool-help , stacks2_denovomap , stacks_denovomap , stacks2_ustacks , stacks_ustacks	3	65	October 23, 2025
FASTQ Paired Reads Splitter? collections	3	76	October 22, 2025
rMATS not available in galaxy tools development-tools , rmats	1	78	July 1, 2025
Empty Output folder - Vina Docking usegalaxy.eu support comp-chemistry , tool-help , prepare_receptor , autodock_vina , prepare_box , docking , prepare_ligands_for_docking , prepare_ligand	5	101	October 21, 2025
Data file storage usegalaxy.org support storage-dashboard	5	115	October 21, 2025
Requestion Additional Storage for Academic Project usegalaxy.org support storage-dashboard , scratch-space	2	55	October 21, 2025
MITOS2, origins of replication tool-help , mitos2	6	179	October 21, 2025
This job was killed when Galaxy was restarted. Please retry the job devops-administration , galaxy-local	11	520	October 20, 2025
Using either DESeq2 or limma voom without replicates usegalaxy.org support deseq2 , limma_voom	4	131	October 18, 2025
RepeatExplorer - TAREAN annotation usegalaxy.eu support genome-annotation	1	31	October 18, 2025