Galaxy Community Help

Topic	Replies	Views	Activity
Troubleshooting resources for errors or unexpected results usegalaxy.org support Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…	1	7121	November 28, 2018
Welcome to Galaxy Community Help	1	2972	November 20, 2018
Seeking Interpretation for Different Results in MECP2 Gene Analysis in Males variant , tutorial	2	12	June 6, 2023
Expected speed / responsiveness with cvmfs mount cvmfs , admin	2	15	June 6, 2023
Data import LEfSe error: Cannot count lines in file galaxy-huttenhower , lefse	8	56	June 6, 2023
Using txt file as a parameter for text input field workflow	6	85	June 6, 2023
Tutorials, tools, and custom reference genomes usegalaxy.eu support tutorial	1	27	June 6, 2023
Visualization of box plot(jqPlot) problem usegalaxy.eu support tutorial , server-open-issue , visualization	10	245	June 5, 2023
Problem with local-galaxy integrated Sort tool admin , conda-dependency , galaxy-local , tool-install	0	71	January 22, 2023
Problem with limma tool conda-dependency , galaxy-local , tool-install , admin	0	101	January 23, 2023
Snippy to find SNP in bacterial DNA seq usegalaxy.eu support variant , assembly , workflow , tutorial , annotation	6	46	June 5, 2023
How to fix errors with Lefse lefse	1	23	June 5, 2023
Job waiting to run usegalaxy.eu support	2	46	June 5, 2023
Cluster issue at UseGalaxy.org -- Status, resolved usegalaxy.org support server-side-delay	2	52	June 5, 2023
Cluster issue at UseGalaxy.org -- Resolved 06/05/2023. Rerun failed (red) or leave queued (gray) usegalaxy.org support server-side-delay	2	25	June 5, 2023
Failled Data upload lefse , galaxy-huttenhower , get-data	6	137	June 5, 2023
This job is still running usegalaxy.org support queued-gray-datasets	1	44	June 5, 2023
can not run any jobs on galaxy main usegalaxy.org support queued-gray-datasets	2	95	June 5, 2023
Jobs waiting to run usegalaxy.eu support upload	8	154	June 4, 2023
Can't set docker user admin admin , galaxy-docker	1	23	June 3, 2023
Mapping reads to references by PEAR, bowtie2, samtool idx and sort tools samtools	4	46	June 2, 2023
reads aligned to multi-references	2	32	June 2, 2023
problem with funannotate usegalaxy.eu support server-open-issue , index	3	41	June 1, 2023
Importing demultiplexed FASTQ.QZ files - Galaxy (EU) QIIME2 usegalaxy.eu support usegalaxyeu , qiime	1	37	May 31, 2023
Transcriptome analysis and Go analysis tutorial , goseq , transcriptomics	1	31	May 31, 2023
An error occurred when I used Trinity to analysis my RNA-seq data (clean paired-end fq.gz files) usegalaxy.org support qa-qc , troubleshooting , trinity , collections , dataset-collection	0	24	May 31, 2023
A problem in the header related to a matrix usegalaxy.eu support data-manipulation , text-manipulation	3	30	May 30, 2023
CLUSTER ERROR making jobs unavailable and they don't work even after re runs usegalaxy.org support troubleshooting	1	34	May 30, 2023
Nextcloud integration usegalaxy.eu support upload-remote-data , nextcloud , admin	3	61	May 29, 2023
Examining and/or modifying RNAStar script internals galaxy-local , tool-dev	1	30	May 26, 2023

Troubleshooting resources for errors or unexpected results

Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…