Galaxy Community Help

Topic	Replies	Views	Activity
How to get faster help with your question share-or-publish , troubleshooting , resources How to get faster help with your question We love details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Questions with details attract the fastest replies! Pleas…	5	713	May 16, 2025
What should I do if my data exceeds the given 250GB of storage? account , storage-dashboard , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	1507	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10914	April 17, 2024
staramr deprecation? usegalaxy.org support tool-help , staramr_search	1	2	July 1, 2025
cut and run: MACS2 error usegalaxy.eu support macs2 , epigenetics	4	14	July 1, 2025
Issue with rnaQUAST tool transcriptomics , rna_quast	24	45	June 30, 2025
FASTA Filter tool error	6	32	June 30, 2025
generate a common AnnotateMyID file from two different runs usegalaxy.eu support annotatemyids , featurecounts	0	1	June 30, 2025
yarn errors building 25.0 release on Ubuntu usegalaxy.org support galaxy-local	0	5	June 29, 2025
rMATS not available in galaxy tools	0	1	June 29, 2025
Locale error when running tools usegalaxy.org support troubleshooting , tool-help	3	14	June 28, 2025
PhageTerm Error usegalaxy.eu support troubleshooting , tool-help	0	2	June 28, 2025
DeepARG predict tool-help , deeparg_predict	1	6	June 28, 2025
Error in running braker3 ERROR in file /opt/BRAKER/scripts/braker.pl at line 5939 failed to execute: /opt/BRAKER/scripts/get_gc_content.py --sequences /data/dnb11/galaxy_db/files/7/b/7/dataset_7b75866e-a463-4df8-a08f-d0c26bd5fa54.dat usegalaxy.eu support server-admin , troubleshooting , annotation , braker3	0	2	June 28, 2025
Issues Modifying Existing Workflow from SE to PE	0	5	June 27, 2025
Random failures when concatenating fastqsanger.gz datasets via collection– "Not in GZIP format" errors usegalaxy.org support	0	5	June 27, 2025
Mapping against a WGS reference usegalaxy.eu support mapping	2	8	June 26, 2025
Unable to upload a dataset via the API using a URL requiring authentication upload , galaxy-local , data-library	2	15	June 26, 2025
Problems downloading some collections from .eu usegalaxy.eu support	4	39	June 26, 2025
How can I create a heatmap from DEG analysis of three treatment groups? usegalaxy.org.au support transcriptomics , tool-help	0	4	June 26, 2025
MACS2 cutoff analysis usegalaxy.org support macs2	0	5	June 25, 2025
Fastq file google drive to galaxy. server-admin , gtn-tutorial , galaxy-local , third-party-identities	2	731	June 25, 2025
Concatenation of RNA_Seq technical replicates usegalaxy.org support troubleshooting	2	6	June 25, 2025
Request to install the RSEM generate data matrix tool (IUC ToolShed ID: toolshed.g2.bx.psu.edu/repos/iuc/rsem/rsem_generate_data_matrix) on usegalaxy.eu to enable end-to-end paired-end RNA-seq workflows. usegalaxy.eu support workflow , tool-help	1	3	June 25, 2025
Job submission failed. Uncaught exception in exposed API method: for Intersect the intervals of two datasets usegalaxy.org support gtn-tutorial	1	7	June 25, 2025
nextdenovo empty fasta files usegalaxy.eu support assembly	2	196	June 25, 2025
Metaspades Single Reads usegalaxy.org support	0	3	June 25, 2025
How can I rename a paired Fastq file? usegalaxy.org support	4	30	June 24, 2025
HiCUP Runtime and Tool Recommendations for Hi-C Analysis usegalaxy.eu support hic	0	3	June 24, 2025
Interactive Tool - multicore? startup time interactive-tools	4	11	June 24, 2025

How to get faster help with your question

share-or-publish , troubleshooting , resources

How to get faster help with your question We love details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Questions with details attract the fastest replies! Pleas…

5

713

May 16, 2025

What should I do if my data exceeds the given 250GB of storage?

account , storage-dashboard , resources , manage-quota , scratch-space

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

1507

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10914

April 17, 2024

staramr deprecation?

usegalaxy.org support

tool-help , staramr_search