Topics tagged single-cell

Topic	Replies	Views	Activity
fgsea and egsea tools usegalaxy.eu support transcriptomics , single-cell , rna-seq , deseq2	4	573	June 12, 2023
Co-assembly with hifiasm-meta assembly , single-cell	1	256	June 9, 2023
A question on single cell seq data analysis usegalaxy.org support gtn-tutorial , single-cell	2	248	May 17, 2023
How to use Seurat in Galaxy? gtn-tutorial , transcriptomics , single-cell , deseq2	1	544	May 17, 2023
Minimap2 fails immediately on mapping fasta to hg38 troubleshooting , fastqsanger , single-cell	3	528	December 20, 2023
trying to turn single cell matrix into anndata troubleshooting , single-cell	1	839	May 2, 2023
Meryl troubleshooting usegalaxy.org.au support assembly , single-cell	1	470	April 19, 2023
Demultiplexing and Quantification of 10X Single-Cell RNA-Seq Datasets using rna star solo usegalaxy.org support troubleshooting , single-cell	2	604	March 10, 2023
Get Longest Read?? single-cell	1	262	February 28, 2023
Unicycler doesn't combine two datasets usegalaxy.eu support assembly , troubleshooting , fastqsanger , single-cell	3	366	January 13, 2023
TRIMMOMATICS error single-cell	10	541	January 2, 2023
Extracting reads from fast5 format troubleshooting , single-cell	4	593	January 13, 2023
Nanopore data upload, format/datatype, and unexpected results from tools usegalaxy.org support troubleshooting , single-cell	6	1276	December 21, 2022
Scanpy RunPCA on tutorial, erroring out for me usegalaxy.eu support gtn-tutorial , single-cell	2	335	December 14, 2022
fastq unavailable -- Tool does not recognize inputs? How to check why metadata , fastqsanger , datatype , resources , single-cell	10	1041	November 10, 2023
Metagenomics analysis on PacBio sequenced data usegalaxy.org support metagenomics , single-cell	2	317	October 19, 2022
Error of inspect anndata usegalaxy.eu support single-cell	9	462	October 6, 2022
Anndata Import Error with 0.8.0 troubleshooting , single-cell	2	1075	December 20, 2023
How to isolate and analyze subclusters from an initial scRNAseq cluster usegalaxy.org support single-cell	1	727	September 23, 2022
Not getting output from Inspect AnnData tool usegalaxy.eu support troubleshooting , single-cell	3	433	September 21, 2022
Problem using Import Anndata tool usegalaxy.eu support troubleshooting , single-cell	4	530	September 13, 2022
RNA-seq clustering of cell lines usegalaxy.org support gtn-tutorial , single-cell	2	454	September 13, 2022
Make variable names unique usegalaxy.eu support troubleshooting , single-cell	3	363	September 17, 2022
Using Scanpy to process single cell data usegalaxy.eu support troubleshooting , single-cell	4	489	July 19, 2022
Pre-processing of Single-Cell RNA Data Tutorial Troubleshooting troubleshooting , single-cell	5	433	July 23, 2022
Subsetting VCF by regions in BED usegalaxy.eu support single-cell , vcf	1	553	February 5, 2022
Long Job using minimap2 usegalaxy.eu support server-admin , single-cell	5	539	January 24, 2022
MiGMAP long run time usegalaxy.eu support troubleshooting , single-cell	19	722	February 10, 2023
HISAT2 Virus Alignment Settings mapping , single-cell	2	473	October 28, 2021
I cannot figure out what to do with Fastq files that are already paired assembly , single-cell , variant-analysis	10	1454	September 30, 2021