Topics tagged single-cell

Topic	Replies	Views	Activity
Unicycler doesn't combine two datasets usegalaxy.eu support assembly , troubleshooting , fastqsanger , single-cell	3	329	January 13, 2023
TRIMMOMATICS error single-cell	10	459	January 2, 2023
Extracting reads from fast5 format troubleshooting , single-cell	4	464	January 13, 2023
Nanopore data upload, format/datatype, and unexpected results from tools usegalaxy.org support troubleshooting , single-cell	6	1128	December 21, 2022
Scanpy RunPCA on tutorial, erroring out for me usegalaxy.eu support gtn-tutorial , single-cell	2	308	December 14, 2022
fastq unavailable -- Tool does not recognize inputs? How to check why metadata , fastqsanger , datatype , resources , single-cell	10	891	November 10, 2023
Metagenomics analysis on PacBio sequenced data usegalaxy.org support metagenomics , single-cell	2	295	October 19, 2022
Error of inspect anndata usegalaxy.eu support single-cell	9	387	October 6, 2022
Anndata Import Error with 0.8.0 troubleshooting , single-cell	2	989	December 20, 2023
How to isolate and analyze subclusters from an initial scRNAseq cluster usegalaxy.org support single-cell	1	625	September 23, 2022
Not getting output from Inspect AnnData tool usegalaxy.eu support troubleshooting , single-cell	3	385	September 21, 2022
Problem using Import Anndata tool usegalaxy.eu support troubleshooting , single-cell	4	463	September 13, 2022
RNA-seq clustering of cell lines usegalaxy.org support gtn-tutorial , single-cell	2	398	September 13, 2022
Make variable names unique usegalaxy.eu support troubleshooting , single-cell	3	336	September 17, 2022
Using Scanpy to process single cell data usegalaxy.eu support troubleshooting , single-cell	4	423	July 19, 2022
Pre-processing of Single-Cell RNA Data Tutorial Troubleshooting troubleshooting , single-cell	5	406	July 23, 2022
Subsetting VCF by regions in BED usegalaxy.eu support single-cell , vcf	1	480	February 5, 2022
Long Job using minimap2 usegalaxy.eu support server-admin , single-cell	5	487	January 24, 2022
MiGMAP long run time usegalaxy.eu support troubleshooting , single-cell	19	679	February 10, 2023
HISAT2 Virus Alignment Settings mapping , single-cell	2	407	October 28, 2021
I cannot figure out what to do with Fastq files that are already paired assembly , single-cell , variant-analysis	10	1341	September 30, 2021
Racon polishing after Shasta and Flye single-cell	2	564	December 21, 2023
Seurat can not save outputs into rds or Rscript ? usegalaxy.org support tool-dev , single-cell	10	964	June 11, 2021
Best Galaxy tools/workflow to analyze scRNAseq Series Matrix from NIH GEO? single-cell	3	489	February 9, 2021
"these should be of equal length" when inputting collections to Unicycler usegalaxy.eu support unicycler , troubleshooting , collections , single-cell	3	493	February 10, 2023
Unable to run Unicycler or ABySS usegalaxy.org support gtn-tutorial , tool-deprecated , single-cell	3	689	February 10, 2023
Chloroplast genome assembly using PacBio data usegalaxy.org.au support single-cell	2	466	December 17, 2020
scRNAseq Galaxy workflow workflow , single-cell	13	2127	December 11, 2020
single cell barcode extraction for STRT-seq usegalaxy.eu support single-cell	10	1507	November 30, 2020
Pacbio fasta and fastq files single-cell	0	425	September 7, 2020