Topics tagged single-cell

Topic	Replies	Views	Activity
Bowtie 2 and mismatch usegalaxy.eu support single-cell	3	382	March 25, 2024
Uploaded RDS files are not visible as input in Seurat tools usegalaxy.eu support single-cell	2	282	February 20, 2024
Test post please ignore single-cell	0	106	January 11, 2024
dada2 learnErrors "unavailable" usegalaxy.org support troubleshooting , single-cell , microgalaxy	1	485	December 21, 2023
DESeq2 with single cell data - do cells from same sample get treated independently during analysis? usegalaxy.eu support single-cell	0	462	July 9, 2021
Normalize with scanpy usegalaxy.eu support tool-help , single-cell , scanpy_normalize	1	819	December 3, 2023
Smart-seq2 data analysis usegalaxy.org support mapping , tool-help , single-cell , rna-seq , rna_starsolo	2	703	November 2, 2023
Single-cell analysis-Seurat not working usegalaxy.org support single-cell	1	263	October 30, 2023
Assembling Einkorn genome single-cell	7	271	October 7, 2023
plasmid spades: fatal error exit code 255 usegalaxy.eu support troubleshooting , single-cell	11	671	December 20, 2023
How to make the dotplot that can split the control and ko group? single-cell	2	851	August 30, 2023
Flye tool error in galaxy usegalaxy.org support assembly , metagenomics , usegalaxy , single-cell	4	810	August 30, 2023
PlasmidSpades successfully ends with no displayed results single-cell	2	368	August 29, 2023
Nanopolish running upload , single-cell	3	242	August 25, 2023
Filter single cells by a specific gene in scRNAseq dataset using scanpy usegalaxy.org support single-cell	1	401	July 25, 2023
Nanopore data analysis by Galaxy usegalaxy.eu support gtn-tutorial , single-cell	1	334	July 20, 2023
Scanpy Find Marker Genes groupby formatting usegalaxy.org support single-cell	6	906	June 21, 2023
Local Galaxy: Flye error during consensus, minimap2 stage server-admin , galaxy-local , galaxy-docker , single-cell	3	615	June 21, 2023
fgsea and egsea tools usegalaxy.eu support transcriptomics , single-cell , rna-seq , deseq2 , egsea	4	781	June 12, 2023
Co-assembly with hifiasm-meta assembly , single-cell	1	282	June 9, 2023
A question on single cell seq data analysis usegalaxy.org support gtn-tutorial , single-cell	2	251	May 17, 2023
How to use Seurat in Galaxy? gtn-tutorial , transcriptomics , single-cell , deseq2	2	598	February 14, 2025
Minimap2 fails immediately on mapping fasta to hg38 troubleshooting , fastqsanger , single-cell	3	608	December 20, 2023
trying to turn single cell matrix into anndata troubleshooting , single-cell	1	954	May 2, 2023
Meryl troubleshooting usegalaxy.org.au support assembly , exceeds-memory-error , single-cell , evolution	1	495	April 19, 2023
Demultiplexing and Quantification of 10X Single-Cell RNA-Seq Datasets using rna star solo usegalaxy.org support troubleshooting , single-cell	2	665	March 10, 2023
Get Longest Read?? single-cell	1	293	February 28, 2023
Unicycler doesn't combine two datasets usegalaxy.eu support assembly , troubleshooting , fastqsanger , single-cell	3	374	January 13, 2023
TRIMMOMATICS error single-cell	10	588	January 2, 2023
Extracting reads from fast5 format troubleshooting , single-cell	4	669	January 13, 2023