Topics tagged single-cell

Topic	Replies	Views	Activity
Flye tool error in galaxy usegalaxy.org support assembly , metagenomics , usegalaxy , single-cell	4	783	August 30, 2023
PlasmidSpades successfully ends with no displayed results single-cell	2	364	August 29, 2023
Nanopolish running upload , single-cell	3	238	August 25, 2023
Filter single cells by a specific gene in scRNAseq dataset using scanpy usegalaxy.org support single-cell	1	398	July 25, 2023
Nanopore data analysis by Galaxy usegalaxy.eu support gtn-tutorial , single-cell	1	316	July 20, 2023
Scanpy Find Marker Genes groupby formatting usegalaxy.org support single-cell	6	852	June 21, 2023
Local Galaxy: Flye error during consensus, minimap2 stage server-admin , galaxy-local , galaxy-docker , single-cell	3	584	June 21, 2023
fgsea and egsea tools usegalaxy.eu support transcriptomics , single-cell , rna-seq , deseq2	4	708	June 12, 2023
Co-assembly with hifiasm-meta assembly , single-cell	1	272	June 9, 2023
A question on single cell seq data analysis usegalaxy.org support gtn-tutorial , single-cell	2	250	May 17, 2023
How to use Seurat in Galaxy? gtn-tutorial , transcriptomics , single-cell , deseq2	2	585	February 14, 2025
Minimap2 fails immediately on mapping fasta to hg38 troubleshooting , fastqsanger , single-cell	3	588	December 20, 2023
trying to turn single cell matrix into anndata troubleshooting , single-cell	1	920	May 2, 2023
Meryl troubleshooting usegalaxy.org.au support assembly , exceeds-memory-error , single-cell , evolution	1	484	April 19, 2023
Demultiplexing and Quantification of 10X Single-Cell RNA-Seq Datasets using rna star solo usegalaxy.org support troubleshooting , single-cell	2	636	March 10, 2023
Get Longest Read?? single-cell	1	276	February 28, 2023
Unicycler doesn't combine two datasets usegalaxy.eu support assembly , troubleshooting , fastqsanger , single-cell	3	369	January 13, 2023
TRIMMOMATICS error single-cell	10	572	January 2, 2023
Extracting reads from fast5 format troubleshooting , single-cell	4	648	January 13, 2023
Nanopore data upload, format/datatype, and unexpected results from tools usegalaxy.org support troubleshooting , single-cell	6	1298	December 21, 2022
Scanpy RunPCA on tutorial, erroring out for me usegalaxy.eu support gtn-tutorial , single-cell	2	339	December 14, 2022
fastq unavailable -- Tool does not recognize inputs? How to check why metadata , fastqsanger , datatype , resources , single-cell	10	1080	November 10, 2023
Metagenomics analysis on PacBio sequenced data usegalaxy.org support metagenomics , single-cell	2	333	October 19, 2022
Error of inspect anndata usegalaxy.eu support single-cell	9	465	October 6, 2022
Anndata Import Error with 0.8.0 troubleshooting , single-cell	2	1132	December 20, 2023
How to isolate and analyze subclusters from an initial scRNAseq cluster usegalaxy.org support single-cell	1	784	September 23, 2022
Not getting output from Inspect AnnData tool usegalaxy.eu support troubleshooting , single-cell	3	434	September 21, 2022
Problem using Import Anndata tool usegalaxy.eu support troubleshooting , single-cell	4	535	September 13, 2022
RNA-seq clustering of cell lines usegalaxy.org support gtn-tutorial , single-cell	2	461	September 13, 2022
Make variable names unique usegalaxy.eu support troubleshooting , single-cell	3	375	September 17, 2022