|
Local Galaxy CVMFS - BWA/BWA-MEM fails to locate the index files
|
|
5
|
832
|
January 30, 2023
|
|
HISAT2 failed to align certain sample
|
|
2
|
299
|
October 12, 2023
|
|
Bowtie 2.0 takes too long to complete
|
|
1
|
460
|
January 11, 2023
|
|
Deepvariant tool installation error on local Galaxy
|
|
2
|
383
|
January 3, 2023
|
|
hisat2 and featurecounts
|
|
14
|
1651
|
January 2, 2023
|
|
Uploading new reference genome
|
|
4
|
539
|
December 19, 2022
|
|
Freebayes errors out in v. 1.3.6 vs 1.3.1
|
|
5
|
595
|
December 19, 2022
|
|
DGE counts of zero on Limma voom
|
|
8
|
521
|
December 15, 2022
|
|
More than 1 week job waits for RNA STAR
|
|
10
|
904
|
December 13, 2022
|
|
RNA Star and mouse Ensembl GRCm39 problem
|
|
3
|
764
|
December 11, 2022
|
|
BLAST: unidentified overrepresented sequences broadly match whole genome sequencing contigs
|
|
3
|
682
|
January 12, 2023
|
|
RNAseq data alignment and counting using Salmon
|
|
4
|
1465
|
November 29, 2022
|
|
Multiple featureCounts let RNAseq workflow not run
|
|
4
|
486
|
November 10, 2022
|
|
galaxy.org is extremely slow to perform the basic mapping
|
|
2
|
339
|
November 8, 2022
|
|
Can't find Bowtie version1 in the tool boxes
|
|
2
|
294
|
October 31, 2022
|
|
new annotated bacterial genome
|
|
4
|
574
|
January 26, 2023
|
|
RNA STAR error: file does not contain alignment data
|
|
3
|
624
|
December 21, 2023
|
|
Bowtie2 error-bowtie2-align died with signal 6 (ABRT)
|
|
3
|
1780
|
October 12, 2023
|
|
FASTQGroomer Error
|
|
3
|
279
|
December 20, 2023
|
|
Trinity genome-guided assembly produces empty files despite the job being completed successfully
|
|
7
|
673
|
September 28, 2022
|
|
FastQC and BWA stalled
|
|
2
|
383
|
September 26, 2022
|
|
No output of STAR Fusion in galaxy
|
|
2
|
485
|
September 21, 2022
|
|
Filter BAM dataset on spliced alignments
|
|
2
|
356
|
September 21, 2022
|
|
Use blastx on Galaxy
|
|
10
|
960
|
September 21, 2022
|
|
Job Error "unknown userid 819800" Sep 10th, 2022 -- Resolved, please try a rerun
|
|
3
|
405
|
September 12, 2022
|
|
BWAmeth: No option available to select the reference genome. Solution: Indexes available at usegalaxy.eu
|
|
4
|
808
|
August 26, 2022
|
|
Galaxy deployment
|
|
5
|
343
|
January 30, 2023
|
|
HISAT2 Error message
|
|
2
|
417
|
December 20, 2023
|
|
filter bam datasets on a variety of attributes (with tag)
|
|
1
|
612
|
August 18, 2022
|
|
MACS2 scientific result troubleshooting
|
|
6
|
675
|
June 16, 2022
|