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ChIPseeker missing first peak in the interval file?
|
|
2
|
146
|
January 10, 2024
|
|
bedgraph-to-bigwig error
|
|
3
|
218
|
November 14, 2023
|
|
The plotHeatmap (DeepTool) does not produce the desired heatmap/ ChIP-seq analysis (H3K4me3)
|
|
4
|
281
|
October 27, 2023
|
|
Rfile throwing error
|
|
1
|
141
|
October 20, 2023
|
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Help with making peaks MACS Chip-sequence analysis
|
|
1
|
203
|
October 2, 2023
|
|
CHM13 T2T genome not found in options for some tools
|
|
10
|
657
|
July 20, 2023
|
|
Score column in narrowPeak file?
|
|
2
|
716
|
May 10, 2023
|
|
How to arrange samples for Diffbind analysis
|
|
6
|
889
|
May 4, 2023
|
|
Chip-seq biological replicates, multiple timepoints
|
|
1
|
286
|
April 13, 2023
|
|
MACS2 peak calling, there is not a explicit input control
|
|
2
|
476
|
November 28, 2022
|
|
MACS2 scientific result troubleshooting
|
|
6
|
643
|
June 16, 2022
|
|
MACS2 narrowpeaks results are empty when adding an input
|
|
2
|
459
|
June 16, 2022
|
|
MACS2 gives no error but I am getting zero peaks as well…problem or not a problem?
|
|
4
|
1017
|
June 15, 2022
|
|
usegalaxy.org IGV connection issue
|
|
4
|
329
|
June 1, 2022
|
|
Fatal error in chip seeker
|
|
1
|
315
|
May 17, 2022
|
|
Tool for merging 2x single-read illumina sequencing files (fastq) into one?
|
|
7
|
412
|
November 5, 2021
|
|
We did our analysis using edgeR and we got many gene but when we used Diffbind we got less no of chromosome regions ?
|
|
1
|
632
|
September 13, 2021
|
|
What are the Parameters for using DiffBind for analysing ATAC-seq in usegalaxy.org
|
|
2
|
443
|
September 11, 2021
|
|
DiffBind Chip-Seq error
|
|
5
|
1028
|
July 15, 2021
|
|
Diffbind error: Not enough y observations
|
|
3
|
1147
|
May 28, 2021
|
|
Error in MACS2 paired end peakcalling
|
|
0
|
447
|
March 24, 2021
|
|
No difference in peaks between ChIP sample and control / Bad background noise on control for ChIP-Seq / Weak enrichment for ChIP-Seq
|
|
0
|
519
|
July 10, 2020
|
|
MiRDeep2 identification of novel and known miRNAs
|
|
28
|
4707
|
May 19, 2020
|
|
Uploading Annotation File to History
|
|
0
|
367
|
April 14, 2020
|
|
Error encountered during peak calling using MACS2 callpeak
|
|
0
|
367
|
April 12, 2020
|
|
ChIP seerker misannotating features
|
|
0
|
260
|
April 11, 2020
|
|
Link ChIP-seq`s peaks with nearby genes
|
|
3
|
698
|
April 1, 2020
|
|
Associate peaks (from ChIP-seq) with nearby genes
|
|
0
|
421
|
March 25, 2020
|
|
computeMatrix takes long to run
|
|
0
|
600
|
February 26, 2020
|
|
Very slow Galaxy.eu server
|
|
0
|
621
|
December 16, 2019
|