Galaxy Community Help

Topic	Replies	Views	Activity
How to construct input dict when running a tool in Galaxy externally through API? usegalaxy.org support tool-help	0	3	June 17, 2025
Error message when Annotating Deseq2 usegalaxy.org support	0	14	June 17, 2025
Pcoa. phylip-formatted distance matrix metagenomics , tool-help , mothur_dist_shared , mothur_pcoa	2	3	June 17, 2025
activate idr/omero connection credentials menu locally server-admin , galaxy-local , toolshed	6	42	June 17, 2025
CustomProDB Job submission failed usegalaxy.eu support tool-help , custom_pro_db	1	5	June 17, 2025
Problem with STARsolo chimeric alignments output as separate tabular junctions in Galaxy usegalaxy.org support workflow , transcriptomics , tool-help , rna_starsolo	0	2	June 17, 2025
activation required	0	4	June 16, 2025
Shovill, several day run/queue for some run usegalaxy.eu support assembly , shovill	0	7	June 15, 2025
Help Needed: coverM Tool Fails with "mkdir: cannot create directory ‘single/’: File exists" Error usegalaxy.eu support tool-help	0	8	June 15, 2025
Mordred descriptor calculation usegalaxy.org support	1	6	June 14, 2025
How to set --outBAMsortingBinsN 200 in RNA STARSolo tool-help , single-cell , rna_starsolo	5	11	June 14, 2025
EGSEA outputs only 5 pathways egsea	2	294	June 14, 2025
miRBase/RNAseq/EGSEA gtn-tutorial , workflow , egsea	2	526	June 14, 2025
Error with running EGSEA usegalaxy.org support transcriptomics , tool-help , egsea	1	7	June 14, 2025
Phylogenetic classification: phage usegalaxy.eu support phylogeny	3	4	June 14, 2025
Inconsistent Memory Errors While Running RNA STARSolo usegalaxy.org support	2	12	June 13, 2025
I can't visualize vcf file after using snippy tool using igv igv	1	8	June 13, 2025
Batch input workflow - how to send jobs to distinct histories? usegalaxy.eu support workflow	1	4	June 13, 2025
Running FeatureCount usegalaxy.eu support featurecounts	1	6	June 12, 2025
Problems with snpEff databases usegalaxy.eu support snpeff	2	6	June 12, 2025
FAQ: NCBI reference data reference-index , reference-annotation , reference-genome , resources	0	45	June 12, 2025
Cannot Preview BAM File on usegalaxy.org – "Unknown or invalid visualization: igv" usegalaxy.org support server-open-issue	6	73	June 12, 2025
CNVkit Reference tool-help , cnvkit_reference	1	5	June 12, 2025
Extract dataset history , collections , tool-help , __extract_dataset__	1	5	June 12, 2025
Bacterial genome sequence analysis usegalaxy.org support mapping , blast , makeblastdb , tool-help , ncbi_tblastn_wrapper	1	6	June 12, 2025
Want to add a new organism for HISAT2 analysis usegalaxy.org support reference-index , reference-annotation , reference-genome	1	10	June 12, 2025
Understanding bcftools isec output files (0000.vcf, 0001.vcf, 0002.vcf, 0003.vcf, sites.txt, README.txt) tool-help , bcftools_isec	1	11	June 11, 2025
snippy tutorial - snpeff step variant-analysis , snpeff_build_gb	9	15	June 11, 2025
Novoplasty inputs usegalaxy.eu support tool-dev , novoplasty	4	27	June 11, 2025
Format issues while trying yo use rnaviralspades usegalaxy.eu support collections , tool-help , spades_rnaviralspades	2	7	June 11, 2025