Topics tagged custom-build

Topic	Replies	Views	Activity
hicBuildMatrix_not_working usegalaxy.eu support custom-build	1	58	March 12, 2024
Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at usegalaxy.eu support fasta-manipulation , custom-genome , reference-genome , custom-build	5	523	January 30, 2024
Reference Genome usegalaxy.org support custom-genome , reference-genome , custom-build	7	234	January 29, 2024
bedgraph-to-bigwig error usegalaxy.eu support custom-genome , macs2 , chrominfo , custom-build	3	230	November 14, 2023
Would it be possible for galaxy to include Camelus dromedarius reference genome in built in index ? reference-index , custom-genome , reference-genome , custom-build	4	299	August 16, 2023
RNA star with reference genome from history error usegalaxy.eu support custom-genome , transcriptomics , reference-annotation , reference-genome , custom-build , deseq2	1	237	August 7, 2023
CHM13 T2T genome not found in options for some tools usegalaxy.org support database , custom-genome , macs2 , mapping , custom-build	10	670	July 20, 2023
Expanding the built-in reference genomes usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	2	276	July 12, 2023
missing reference genome (Aedes aegypti AaegL5.0) usegalaxy.org.au support reference-index , custom-genome , mapping , transcriptomics , custom-build , featurecounts	5	279	June 13, 2023
version and source of the galaxy built-in genome usegalaxy.eu support reference-index , custom-genome , reference-genome , cvmfs , custom-build	2	762	May 5, 2023
Source of built in reference genomes usegalaxy.eu support custom-genome , reference-genome , cvmfs , custom-build	1	351	May 5, 2023
Unresponsive page when load fasta file to build rice (Oryza sativa) genome usegalaxy.org support custom-genome , mapping , custom-build , server-status	1	228	April 13, 2023
Genome build for dog in RNA STAR usegalaxy.eu support reference-index , custom-genome , reference-genome , custom-build	5	334	March 20, 2023
Adding new Reference genomes to the DeepVariant deep learning-based variant caller usegalaxy.eu support custom-genome , mapping , transcriptomics , reference-annotation , reference-genome , custom-build , featurecounts	1	597	January 26, 2023
how to index the Tetrahymena genome? custom-genome , custom-build	4	680	January 26, 2023
Request for of Plasmodium species reference genome usegalaxy.org support custom-genome , reference-annotation , reference-genome , custom-build	2	353	January 26, 2023
How can I add a new reference genome to the list? usegalaxy.org support custom-genome , custom-build	1	336	August 25, 2022
"An error occurred setting metadata for this data set"-STR DETECTION dataset , custom-genome , datatype , custom-build	8	1027	February 18, 2022
How to do Augustus training or Maker training? usegalaxy.eu support gtn-tutorial , workflow , collections , custom-build	23	2250	September 12, 2021
Reference geneome usegalaxy.org support custom-genome , custom-build	1	406	August 10, 2021
Setting a custom database input for tools -- in a workflow or on a tool form workflow , data-manager , igv , cvmfs , custom-build	8	829	June 23, 2021
Very long running time for RepeatMasker? usegalaxy.eu support workflow , custom-genome , custom-build , genome-annotation	9	573	May 21, 2021
Error in Naive Variant Caller (NVC) in usegalaxy.org -- Resolved usegalaxy.org support database , custom-genome , usegalaxy , custom-build	7	671	February 15, 2021
Extract Genomic DNA Invalid Lines Error usegalaxy.org support bed , custom-genome , troubleshooting , custom-build	6	922	January 22, 2021
Please add the Xenopus laevis reference genome to Galaxy -- Indexing already planned, use a Custom Genome/Build for now usegalaxy.org support custom-genome , reference-genome , custom-build	6	850	December 18, 2020
Uploading A. thaliana reference genome to RNA STAR usegalaxy.org support custom-genome , troubleshooting , reference-annotation , reference-genome , custom-build	1	553	November 30, 2020
Alternative to DM tools for inbuilt reference sequence usegalaxy.eu support database , custom-genome , data-manager , custom-build	3	738	November 30, 2020
RNA Star alignment to opposum monDom5 genome usegalaxy.org support custom-genome , reference-annotation , reference-genome , custom-build	1	453	November 10, 2020
Request for including 2x fungal genomes in the GALAXY reference genome list usegalaxy.eu support custom-genome , reference-genome , custom-build , epigenetics	2	696	October 29, 2020
Mitochondrial genome usegalaxy.eu support server-admin , custom-genome , custom-build	4	909	September 20, 2020