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How to solve problems with data formats: GTN Data Manipulation Olympics tutorials!
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2
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121
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March 13, 2025
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Free energy landsape using Bio3d in galaxy
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5
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149
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August 18, 2025
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FAQ: NCBI reference data
:speech_balloon: How to find NCBI Reference data?
Q: Where can I find the URL links to a reference genome FASTA, annotation, or GenBank file?
A: Use the NCBI Genome Assembly page for the organism of interest — for examp…
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0
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329
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June 12, 2025
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Need help with the dataset error report on MITOS (version 1.1.7) de-novo annotation tool of metazoan mitochondrial genomes
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5
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127
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September 24, 2024
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How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes
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1
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202
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April 17, 2024
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How to review a BAM! Metadata, reference genome, workflows
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1
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112
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November 27, 2024
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Help with RNA Star, Featurecounts, and reference annotation choices
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1
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196
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August 19, 2025
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Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis
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2
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88
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April 16, 2025
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Ensembl gene annotation gtf for rat problem with RNA STAR
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2
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155
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February 26, 2025
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CREx_rearrangement scenario
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4
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111
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September 4, 2025
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TEtranscripts input datasets
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3
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124
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August 11, 2025
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Cut and run: MACS2 error
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6
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91
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July 9, 2025
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Data Storage choices when using Workflows
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2
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140
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January 10, 2025
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How can I rename a paired Fastq file?
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4
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107
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June 24, 2025
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Why collections?
Collections are one of the super-killer features of Galaxy!
By Anton Nekrutenko
October 21, 2025
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0
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233
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October 21, 2025
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Resolving memory failures with SPAdes
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1
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162
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August 27, 2024
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Tool 'sra_source' does not exist
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2
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132
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September 23, 2025
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Panaroo tool help
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1
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159
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April 16, 2025
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Inquiry about lettuce genome
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2
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130
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October 7, 2024
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Active (green) History dataset: unable to use as input as tools say it was deleted
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3
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107
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December 17, 2024
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Need help to run Phyloseq in Galaxy to characterize microbial taxa
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2
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121
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September 17, 2024
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An error of limma
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1
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147
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May 2, 2024
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How do I use galaxy tools to create a paired end collection folder (data shapes and organization)
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2
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119
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December 3, 2024
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Archived history
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3
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103
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April 1, 2025
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Collection folder VIDEO: How to create a single or paired end dataset collection folder (shapes and organization)
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3
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97
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September 29, 2025
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Question about UMI-tools extract: different version from the tutorial?
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3
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95
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August 13, 2025
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Error with Visualize with Krona tool? Use Krona Pie Chart instead!
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1
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130
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January 28, 2025
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Extract Genomic DNA
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1
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72
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July 9, 2024
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Downloading a List with 250+ files and Renaming
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2
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103
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May 6, 2025
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MITOS2 error can't run job
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3
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85
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August 29, 2025
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Help me with the error on mem bwa
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1
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115
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October 15, 2024
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Kraken2 reference database for shotgun sequencing data
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4
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69
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September 30, 2025
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HUMAnN fails due to MetaPhlAn database mismatch
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1
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109
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November 17, 2025
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This job was terminated because itused more memory than it wasallocated
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1
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108
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April 25, 2025
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Asking about qiime2 tools import
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1
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102
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August 5, 2025
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Need Help with Mapping Genome Skimming Data and Generating Consensus Sequences in Galaxy
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1
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87
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September 16, 2024
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About DESeq2 Errors
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1
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84
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August 14, 2024
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Kraken2 Not supporting the required formats for paired sequencing
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1
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82
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September 8, 2025
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Error reported for fgsea - gene set enrichment tool
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1
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79
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May 16, 2025
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2025 Update! Convert Genome Coordinates? Avoid :warning: Liftover and try using CrossMap
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1
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76
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September 12, 2024
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Kraken2 Job Fails Repeatedly on Galaxy
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2
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62
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July 30, 2025
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Apollo help for Create or Update Organism
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1
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75
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March 17, 2025
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mergePreClusterReads in LotuS2
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3
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49
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August 12, 2025
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DADA2 Merge Pairs troubleshooting
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1
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66
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August 27, 2025
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SnpSift Filter help
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1
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66
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January 3, 2025
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Convert GTF to BED12
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1
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64
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August 28, 2025
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How to inspect the details of a tool wrapper: reproducibility and versioning
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1
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60
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September 11, 2024
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Discrepancy between data analyzed by R and Galaxy
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1
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56
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September 20, 2024
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Flye giving error with bacterial genome
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1
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54
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August 21, 2025
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Large genome assembly? See VGP resources and access your self-serve extended data storage!
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1
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51
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August 20, 2025
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