Topics tagged deseq2

Topic	Replies	Views	Activity
Deseq2 differential expression analysis transcriptomics , annotatemyids , tool-help , deseq2 , featurecounts	1	37	April 18, 2024
Is there a need to include 2nd factor if there's only paired reads in the dataset for DeSeq2? usegalaxy.org support deseq2	4	118	February 21, 2024
DESeq2 with likelihood ratio test usegalaxy.org support deseq2	0	92	January 4, 2024
Time for Running RNA Seq Workflow usegalaxy.org support mapping , transcriptomics , queued-gray-datasets , deseq2 , stringtie	1	208	December 1, 2023
An error occurred while running the tool Sartools DESeq2 public-galaxy-server , transcriptomics , deseq2	3	155	November 28, 2023
Issue with StringTie usegalaxy.org support troubleshooting , mapping , transcriptomics , rna-seq , deseq2 , stringtie	5	1702	December 20, 2023
EdgeR Tutorial for Differential Gene Expression gtn-tutorial , transcriptomics , limma , deseq2 , edger	2	413	November 7, 2023
StringTie producing empty column for gene and transcript counts usegalaxy.org support troubleshooting , mapping , transcriptomics , reference-annotation , rna-seq , deseq2 , stringtie	9	301	December 21, 2023
Troubleshooting DexSeq transcriptomics , deseq2	10	254	November 2, 2023
DeSeq2 Fatal Error - US.UTF-8 cannot be honored transcriptomics , deseq2 , edger	4	898	November 1, 2023
Deseq2 analysis output too many DEGs usegalaxy.eu support transcriptomics , rna-seq , deseq2 , featurecounts	1	186	October 26, 2023
DESEQ2 - How does it work? usegalaxy.org.au support transcriptomics , limma , rna-seq , deseq2 , featurecounts	8	4223	October 26, 2023
Problem in DESe2 with multiple factors usegalaxy.eu support transcriptomics , rna-seq , deseq2	3	160	October 24, 2023
GTF2GeneList finds features but stores 0 bytes in annotation.txt usegalaxy.org support troubleshooting , transcriptomics , deseq2	9	289	December 21, 2023
Fatal error: An undefined error occurred. transcriptomics , rna-seq , deseq2	1	183	October 17, 2023
Error of Deseq2 usegalaxy.eu support mapping , transcriptomics , deseq2 , stringtie	1	276	October 16, 2023
Error in the Deseq2 transcriptomics , limma , deseq2	8	194	October 11, 2023
DESEq2 error while running usegalaxy.org support transcriptomics , limma , rna-seq , deseq2	4	251	October 6, 2023
Differential gene expression: DESeq2 error usegalaxy.org support transcriptomics , limma , deseq2 , edger	5	347	October 2, 2023
Can i extract determinate sequences from a FASTA proteome having the transcript_is's in galaxy usegalaxy.org support server-admin , transcriptomics , deseq2	1	182	October 2, 2023
DeSeq2 or limma analyze paired data usegalaxy.org support transcriptomics , limma , deseq2	3	220	September 12, 2023
Assembly statistics in reference based RNA seq analysis_tools assembly , mapping , transcriptomics , rna-seq , deseq2 , stringtie	1	169	September 6, 2023
DESeq2 with pair end file (Stringtie) usegalaxy.org support transcriptomics , rna-seq , deseq2 , stringtie	1	147	September 5, 2023
How to change from gene_id to GeneID usegalaxy.org support text-manipulation , transcriptomics , deseq2	2	235	September 4, 2023
Same error time and again usegalaxy.org support mapping , transcriptomics , deseq2	6	543	August 11, 2023
RNA star with reference genome from history error usegalaxy.eu support custom-genome , transcriptomics , reference-annotation , reference-genome , custom-build , deseq2	1	232	August 7, 2023
featureCounts strand setting and impact on DESeq2 results usegalaxy.org support transcriptomics , rna-seq , deseq2 , featurecounts	2	673	July 26, 2023
Problem with the annotatemyIDs tool usegalaxy.eu support annotation , transcriptomics , limma , annotatemyids , deseq2	3	340	July 25, 2023
DESeq2 Error Message troubleshooting usegalaxy.org support transcriptomics , deseq2	1	231	July 19, 2023
RNA Seq analysis - DESEQ2 no significative p-value/log2(FC) usegalaxy.org support workflow , transcriptomics , rna-seq , deseq2 , featurecounts	1	251	July 16, 2023