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Generating tx2gene map and filtering for rnaSPAdes (de novo)
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3
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23
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January 31, 2026
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Gene and transcript level quant using salmon
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4
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27
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January 8, 2026
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"`CXXABI_1.3.13' not found" when running Salmon
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4
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198
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December 23, 2025
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GO enrichment on up and down regulated genes on treated sample
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1
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37
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December 15, 2025
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Workflow cannot be executed Uncaught exception in exposed API method
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1
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24
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December 9, 2025
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How to perform quality trimming without adapter removal in Cutadapt?
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1
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34
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December 8, 2025
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GWAS troubleshooting
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3
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38
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December 4, 2025
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Genome wide alternate splicing analysis - IsoformSwitchAnalyzeR error from StringTie input - no CDS
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10
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259
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December 3, 2025
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Using CHM13v2.0 T2T and mm39 gene annotations for RNASeq Analysis
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3
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75
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December 3, 2025
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Is a "?" in featureCounts' database field a problem when using a non-built-in genome?
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1
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50
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November 24, 2025
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miRNA alignment on Bowtie2/miRDeep
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1
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29
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November 15, 2025
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[Beginner Question] Identifying Gene ID vs Protein ID
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1
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40
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November 11, 2025
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BAM/SAM Mapping Stats
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1
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29
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November 3, 2025
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Suggestions for Reliable Alternative Splicing Workflow in Galaxy?
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1
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37
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October 27, 2025
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Download and Extract reads in FASTQ format from NCBI SRA in workflow issue
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5
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146
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October 27, 2025
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Assembly statistics in reference based RNA seq analysis_tools
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1
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285
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September 6, 2023
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Asking for unmapped genes in RNA sequencing via Galaxy
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1
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28
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August 25, 2025
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Help with RNA Star, Featurecounts, and reference annotation choices
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1
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122
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August 19, 2025
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Issue with rnaQUAST tool
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27
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257
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August 19, 2025
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Problem with STARsolo chimeric alignments output as separate tabular junctions in Galaxy
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1
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34
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August 5, 2025
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Heatmap2: which transformations does the tool apply before plotting my data?
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2
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70
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July 23, 2025
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Mapping RNAseq reads to Brachypodium distachyon genome
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2
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50
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July 23, 2025
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Annotate DESeq2/DEXSeq tool error
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10
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138
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July 22, 2025
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Error with running EGSEA
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1
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40
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June 14, 2025
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sortmeRNA creating identical aligned and unaligned files?
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2
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59
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June 10, 2025
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Problem with "featurecounts" after MACS2 call peak for ATAC-seq analysis
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1
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51
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June 2, 2025
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DEseq analysis on featurecounts from two chromosomes of the same genome
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2
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51
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May 27, 2025
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uploading metadata file
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2
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46
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May 22, 2025
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Error reported for fgsea - gene set enrichment tool
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1
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59
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May 16, 2025
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RNA-Star FeatureCount error for REF RNA-seq training
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1
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43
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May 16, 2025
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